Detailed information NTG0334134

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: FXN59_RS02255
• Genome accession: NZ_CP043004
• Coordinates: 425892..426551 (-)
• Length: 219 a.a.
• NCBI ID: WP_005562038.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain HK_973
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 420892..431551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FXN59_RS02220 (FXN59_02220)	rpmE	421312..421524 (+)	213	WP_005542845.1	50S ribosomal protein L31	-
FXN59_RS02225 (FXN59_02225)	-	421587..422279 (+)	693	WP_148327215.1	glycosyltransferase family 25 protein	-
FXN59_RS02230 (FXN59_02230)	-	422280..423302 (+)	1023	WP_012820860.1	glycosyltransferase family 9 protein	-
FXN59_RS02235 (FXN59_02235)	-	423312..424364 (+)	1053	WP_148323807.1	glycosyltransferase family 9 protein	-
FXN59_RS02240 (FXN59_02240)	mutM	424367..425182 (-)	816	WP_148323805.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
FXN59_RS02245 (FXN59_02245)	rpmG	425265..425435 (-)	171	WP_005544948.1	50S ribosomal protein L33	-
FXN59_RS02250 (FXN59_02250)	rpmB	425447..425683 (-)	237	WP_005542826.1	50S ribosomal protein L28	-
FXN59_RS02255 (FXN59_02255)	radC	425892..426551 (-)	660	WP_005562038.1	DNA repair protein RadC	Machinery gene
FXN59_RS02260 (FXN59_02260)	coaBC	426729..427928 (+)	1200	WP_005562040.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FXN59_RS02265 (FXN59_02265)	dut	427997..428452 (+)	456	WP_005562041.1	dUTP diphosphatase	-
FXN59_RS02270 (FXN59_02270)	slmA	428452..429051 (+)	600	WP_005540234.1	nucleoid occlusion factor SlmA	-
FXN59_RS02275 (FXN59_02275)	-	429075..429293 (+)	219	WP_005540236.1	YheU family protein	-
FXN59_RS02280 (FXN59_02280)	crp	429364..429975 (+)	612	WP_230583193.1	cAMP-activated global transcriptional regulator CRP	Regulator
FXN59_RS02285 (FXN59_02285)	gorA	430108..431478 (-)	1371	WP_151294155.1	glutathione-disulfide reductase	-

Sequence

Protein

• Length: 219 a.a.
• Molecular weight: 24901.00 Da
• Isoelectric Point: 6.9423

>NTDB_id=334134 FXN59_RS02255 WP_005562038.1 425892..426551(-) (radC) [Aggregatibacter actinomycetemcomitans strain HK_973]
MNEALMPREKLLKYGAAALTDDELLAIFLRTGIKDCPVMQLSKNVLQHFGSLRELISANQKQFCAVKGIGITQFIQLQAC
TEMTRRYLFAELKETHCFTSPDIVKMYLQTELANTEREIFMVLFLDNQHRLIKQERLFLGTINKAMVYPREIIKEALACN
AAAIILAYNHPSGVAEPSISDKQITDTIRQAADLVDIRVLDHFVIGNGRYFSFSEQNLL

Nucleotide

• Length: 660 bp

>NTDB_id=334134 FXN59_RS02255 WP_005562038.1 425892..426551(-) (radC) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGAATGAAGCATTAATGCCAAGGGAAAAGCTATTAAAATACGGTGCTGCCGCTTTGACGGACGATGAACTATTGGCGAT
CTTTTTGCGTACGGGAATTAAGGACTGCCCGGTGATGCAGTTATCGAAAAATGTGCTACAACATTTCGGTTCGTTACGTG
AATTGATTAGCGCCAATCAAAAGCAGTTTTGCGCCGTGAAAGGCATTGGTATTACGCAGTTTATTCAGCTGCAAGCCTGT
ACTGAAATGACCCGCCGTTATTTGTTTGCAGAATTAAAAGAGACCCACTGTTTTACCTCTCCCGACATTGTGAAAATGTA
TTTGCAGACGGAGCTGGCAAATACCGAGCGGGAAATTTTTATGGTGCTTTTTCTGGATAATCAACATCGTTTGATTAAGC
AGGAGCGCCTGTTTCTCGGTACCATTAATAAAGCGATGGTGTATCCGCGCGAGATCATTAAAGAAGCCTTGGCTTGTAAT
GCGGCGGCGATTATTTTGGCGTATAATCACCCTTCCGGCGTGGCGGAGCCGAGCATTTCCGATAAACAAATTACCGATAC
TATCAGACAGGCGGCGGATTTGGTGGATATTCGCGTGCTGGATCATTTCGTGATCGGCAATGGACGTTATTTTTCCTTTT
CGGAACAAAATCTTCTTTAA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-72)

• RadC-like JAB domain (RadC) (98-217)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	66.972	99.543	0.667