Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FXN58_RS02870 Genome accession   NZ_CP043003
Coordinates   534904..535713 (-) Length   269 a.a.
NCBI ID   WP_148323793.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 529904..540713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS02840 (FXN58_02835) aroB 530180..531268 (-) 1089 WP_148323781.1 3-dehydroquinate synthase -
  FXN58_RS02845 (FXN58_02840) aroK 531292..531819 (-) 528 WP_148323783.1 shikimate kinase AroK -
  FXN58_RS02850 (FXN58_02845) comE 532086..533441 (-) 1356 WP_148323785.1 type IV pilus secretin PilQ Machinery gene
  FXN58_RS02855 (FXN58_02850) - 533462..533854 (-) 393 WP_148323787.1 pilus assembly protein PilP -
  FXN58_RS02860 (FXN58_02855) - 533854..534378 (-) 525 WP_148323789.1 type II secretion system protein M -
  FXN58_RS02865 (FXN58_02860) - 534375..534893 (-) 519 WP_148323791.1 PilN domain-containing protein -
  FXN58_RS02870 (FXN58_02865) comA 534904..535713 (-) 810 WP_148323793.1 competence protein ComA Machinery gene
  FXN58_RS02875 (FXN58_02870) - 535847..538414 (+) 2568 WP_005581959.1 penicillin-binding protein 1A -
  FXN58_RS02880 (FXN58_02875) - 538510..539355 (+) 846 WP_148323795.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31443.98 Da        Isoelectric Point: 6.1113

>NTDB_id=334095 FXN58_RS02870 WP_148323793.1 534904..535713(-) (comA) [Aggregatibacter actinomycetemcomitans strain HK_907]
MFIRHIPTLQVGLWCRGETIDAAWIDPQNQPHFLRLGELELMELTSHLNRRFNHPRKKFAYKFITAIMPHQIWQKTLILP
HNLNLQECEQQCHFSLTNELPIPTEEVWYDYAATPLKQGFRLDIFAIRQQIATEYLQQLMPLQIDVLDNAAKAMLRAAEY
FLGHALPNNAVFLYQDETGLLAVQHKLQQTQRLFQTQGNLTALLAQYCQRYEEEPTQVFYYQTEKDAQAIPQSWHAIETE
LPFIALGNALWQRETPLKSTALFDADHNI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=334095 FXN58_RS02870 WP_148323793.1 534904..535713(-) (comA) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGTTTATTAGACACATTCCCACACTGCAAGTCGGTCTTTGGTGCCGTGGAGAAACCATCGACGCAGCGTGGATCGACCC
GCAAAATCAACCGCACTTTTTGCGCCTCGGCGAACTGGAATTAATGGAACTGACAAGCCATTTAAACCGTCGTTTTAACC
ATCCGCGCAAAAAATTCGCCTACAAATTTATTACCGCCATCATGCCCCATCAAATCTGGCAGAAAACCTTGATTTTGCCC
CATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAGGT
GTGGTATGACTACGCCGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAG
AATATTTGCAACAACTTATGCCTTTACAAATTGATGTGTTGGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATAT
TTTTTGGGGCACGCCTTGCCAAATAACGCCGTATTTTTATATCAGGACGAAACGGGCTTGCTGGCGGTACAACACAAATT
ACAGCAAACCCAAAGGCTGTTCCAAACACAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGAAGAAG
AACCGACGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTGAAACCGAG
CTACCGTTCATCGCGTTAGGTAACGCCTTGTGGCAACGGGAAACGCCGTTGAAATCCACCGCACTTTTTGACGCCGACCA
CAACATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

40.927

96.283

0.394
  comA Haemophilus influenzae 86-028NP

40.927

96.283

0.394