Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FXN58_RS01130 Genome accession   NZ_CP043003
Coordinates   223437..224669 (-) Length   410 a.a.
NCBI ID   WP_148323404.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 218437..229669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS12160 - 218660..218851 (-) 192 WP_233444046.1 hypothetical protein -
  FXN58_RS01100 (FXN58_01100) - 219061..219447 (-) 387 WP_148323396.1 MerR family DNA-binding protein -
  FXN58_RS01105 (FXN58_01105) - 219542..219754 (+) 213 WP_005547502.1 heavy-metal-associated domain-containing protein -
  FXN58_RS01110 (FXN58_01110) - 219841..222000 (+) 2160 WP_148323398.1 cation-translocating P-type ATPase -
  FXN58_RS01115 (FXN58_01115) - 222092..222592 (+) 501 Protein_215 DUF817 family protein -
  FXN58_RS01120 (FXN58_01120) - 222708..223058 (+) 351 WP_148323400.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FXN58_RS01125 (FXN58_01125) - 223051..223374 (+) 324 WP_148323402.1 helix-turn-helix domain-containing protein -
  FXN58_RS01130 (FXN58_01130) clpX 223437..224669 (-) 1233 WP_148323404.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  FXN58_RS01135 (FXN58_01135) clpP 224679..225260 (-) 582 WP_148323406.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  FXN58_RS01140 (FXN58_01140) - 225502..227103 (-) 1602 WP_148323408.1 phosphoethanolamine transferase -
  FXN58_RS01145 (FXN58_01145) gshAB 227335..229608 (+) 2274 WP_148323410.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45321.95 Da        Isoelectric Point: 4.7614

>NTDB_id=334082 FXN58_RS01130 WP_148323404.1 223437..224669(-) (clpX) [Aggregatibacter actinomycetemcomitans strain HK_907]
MAKDKELRCSFCGKEQDEVNKLIAGTSGYICNECIELCHDMLLNEEHGEEAEAAKQQELPTPHQIRAHLDDYVIGQDYAK
KVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKL
LQNCDYDIERAEQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMLRIDTSKILF
ICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTDLFKQVEPDDLMKYGLIPEFIGRLPVVAPLSELDEEALVRI
LTEPKNALCKQYQALFGLEEVALEFTNEALTAMAKKALARKTGARGLRSIIEGVLLDTMYDLPSLEGLKKVVVNENVIND
NQSPELIYSN

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=334082 FXN58_RS01130 WP_148323404.1 223437..224669(-) (clpX) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGGCAAAAGATAAAGAATTACGCTGTTCTTTCTGTGGCAAAGAACAAGACGAAGTGAATAAACTTATCGCCGGCACTTC
CGGTTACATTTGTAACGAATGTATCGAATTGTGCCACGATATGCTGCTCAACGAAGAACATGGCGAAGAAGCGGAAGCCG
CAAAGCAACAGGAATTACCGACACCCCACCAAATCCGCGCTCATTTGGACGATTATGTCATCGGTCAGGATTACGCCAAA
AAAGTGTTGGCGGTGGCGGTGTATAACCACTACAAACGCCTGCGCACCAAACATCAGACGAACGATGTGGAACTGGGCAA
AAGTAACATTTTGCTTATCGGCCCGACCGGTAGCGGCAAAACCTTATTGGCGGAAACCATGGCGCGTATGTTAAACGTGC
CTTTCGCCATGGCGGATGCCACCACCTTAACGGAAGCCGGTTATGTGGGCGAAGATGTGGAAAACGTGTTGCAGAAATTG
CTACAAAACTGCGATTACGACATTGAACGCGCAGAACAAGGCATTATCTACATCGACGAAATCGACAAAATCACCCGCAA
ATCGGAAAATCCGTCCATTACCCGTGATGTCTCCGGCGAAGGCGTACAACAAGCCTTATTAAAACTCATCGAAGGCACCA
TCGCCTCCATTCCGCCACAAGGCGGACGCAAACACCCGCAACAGGAAATGTTACGCATCGACACCTCCAAAATCCTGTTT
ATTTGCGGCGGGGCGTTTGCGGGCTTAGATAAAGTCATCGAAAAACGCACCAGCGTCGCCACCGCCATCGGTTTCGGCGC
CGAAATTAAGAGCGAAAAAGACAAAGCGACACTGACCGACTTATTCAAACAAGTAGAACCGGACGATTTAATGAAATACG
GCTTAATCCCGGAATTCATCGGACGCTTGCCGGTGGTGGCCCCCTTAAGCGAATTGGACGAAGAAGCCTTGGTACGCATT
CTCACCGAACCGAAAAACGCCCTGTGCAAGCAATATCAAGCATTGTTTGGCTTGGAAGAGGTGGCATTGGAATTCACCAA
CGAAGCCTTAACCGCGATGGCGAAAAAAGCCCTCGCCCGCAAAACCGGCGCCCGTGGCTTACGTTCCATCATTGAAGGCG
TCTTGCTTGACACCATGTACGACTTACCATCCCTGGAAGGCTTAAAAAAAGTCGTGGTCAACGAAAACGTCATCAACGAC
AACCAATCCCCGGAATTGATTTATTCCAACTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

AAA domain (Cdc48 subfamily) (AAA_2)

(107-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

59.753

98.78

0.59
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.172

99.024

0.546

Multiple sequence alignment