Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FWK45_RS00795 Genome accession   NZ_CP043001
Coordinates   143851..144519 (+) Length   222 a.a.
NCBI ID   WP_011608296.1    Uniprot ID   B0UUW7
Organism   Histophilus somni strain UOC-KLM-ATR-04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 138851..149519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK45_RS00765 (FWK45_00765) recF 139292..140368 (+) 1077 WP_132994585.1 DNA replication/repair protein RecF -
  FWK45_RS00770 (FWK45_00770) crp 140425..141069 (-) 645 WP_011608291.1 cAMP-activated global transcriptional regulator CRP Regulator
  FWK45_RS00775 (FWK45_00775) - 141082..141306 (-) 225 WP_012341336.1 YheU family protein -
  FWK45_RS00780 (FWK45_00780) slmA 141341..142000 (-) 660 WP_011608293.1 nucleoid occlusion factor SlmA -
  FWK45_RS00785 (FWK45_00785) dut 142000..142455 (-) 456 WP_011608294.1 dUTP diphosphatase -
  FWK45_RS00790 (FWK45_00790) coaBC 142452..143678 (-) 1227 WP_132994586.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FWK45_RS00795 (FWK45_00795) radC 143851..144519 (+) 669 WP_011608296.1 DNA repair protein RadC Machinery gene
  FWK45_RS00800 (FWK45_00800) rpmB 144740..144976 (+) 237 WP_011608297.1 50S ribosomal protein L28 -
  FWK45_RS00805 (FWK45_00805) rpmG 144988..145158 (+) 171 WP_005542835.1 50S ribosomal protein L33 -
  FWK45_RS00810 (FWK45_00810) mutM 145263..146075 (+) 813 WP_011608298.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FWK45_RS00815 (FWK45_00815) ilvG 146167..147843 (+) 1677 WP_132994587.1 acetolactate synthase 2 catalytic subunit -
  FWK45_RS00820 (FWK45_00820) ilvM 147847..148065 (+) 219 WP_011608300.1 acetolactate synthase 2 small subunit -
  FWK45_RS00825 (FWK45_00825) - 148131..148793 (+) 663 WP_012340638.1 MOSC domain-containing protein -
  FWK45_RS00830 (FWK45_00830) - 148910..149413 (+) 504 WP_011608302.1 chorismate lyase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25553.76 Da        Isoelectric Point: 7.3730

>NTDB_id=334025 FWK45_RS00795 WP_011608296.1 143851..144519(+) (radC) [Histophilus somni strain UOC-KLM-ATR-04]
MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL
QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL
FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=334025 FWK45_RS00795 WP_011608296.1 143851..144519(+) (radC) [Histophilus somni strain UOC-KLM-ATR-04]
ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT
ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT
CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA
CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACAGT
TCGTATGTATTTACAGACTGAATTGGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT
TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACAGCACTA
TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT
GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT
TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(101-220)

UPF0758 N-terminal (UPF0758_N)

(8-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UUW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

64.815

97.297

0.631