Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   FRD49_RS01780 Genome accession   NZ_CP042994
Coordinates   376314..376763 (+) Length   149 a.a.
NCBI ID   WP_148356612.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371314..381763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS01755 (FRD49_01755) - 371778..373883 (-) 2106 WP_004711681.1 RelA/SpoT family protein -
  FRD49_RS01760 (FRD49_01760) - 373922..374053 (-) 132 WP_102990545.1 hypothetical protein -
  FRD49_RS01765 (FRD49_01765) rpoZ 374092..374370 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FRD49_RS01770 (FRD49_01770) gmk 374443..375072 (-) 630 WP_002051739.1 guanylate kinase -
  FRD49_RS01775 (FRD49_01775) ispH 375195..376145 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FRD49_RS01780 (FRD49_01780) fimU 376314..376763 (+) 450 WP_148356612.1 GspH/FimT family pseudopilin Machinery gene
  FRD49_RS01785 (FRD49_01785) pilV 376760..377260 (+) 501 WP_079377472.1 type IV pilus modification protein PilV Machinery gene
  FRD49_RS01790 (FRD49_01790) pilW 377262..378299 (+) 1038 WP_031955976.1 PilW family protein Machinery gene
  FRD49_RS01795 (FRD49_01795) - 378296..379078 (+) 783 WP_148356613.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16131.69 Da        Isoelectric Point: 8.5211

>NTDB_id=333954 FRD49_RS01780 WP_148356612.1 376314..376763(+) (fimU) [Acinetobacter nosocomialis strain J1A]
MRGMIPQEGFTLIELIVTIVVIAIIAVMAVPMFGDMLNNQNLNRSSEDLVSSINQARMKAIVERRQVKVQLNSTYVADSD
NQINWVPSGKAQLKTGSNTSIVFLMSGLVKDATGDTTFEICNTASGNKSKIINVSRMGSIQSITMGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=333954 FRD49_RS01780 WP_148356612.1 376314..376763(+) (fimU) [Acinetobacter nosocomialis strain J1A]
ATGAGGGGAATGATTCCGCAAGAAGGGTTCACCTTAATTGAGCTCATAGTGACAATTGTGGTTATAGCAATTATTGCTGT
GATGGCTGTACCAATGTTTGGGGATATGTTGAATAATCAAAATTTGAATAGAAGTTCAGAAGATCTAGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTATAGTCGAGCGTAGACAAGTAAAAGTGCAATTAAATTCTACGTATGTGGCAGATAGTGAT
AATCAAATTAATTGGGTACCAAGCGGAAAAGCTCAATTAAAAACAGGATCTAATACTTCTATAGTATTTTTAATGTCCGG
TTTGGTAAAAGATGCAACCGGAGATACAACTTTTGAAATTTGTAATACGGCATCTGGTAATAAATCAAAAATTATTAATG
TTTCAAGAATGGGATCAATTCAGTCAATCACAATGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

36.478

100

0.389