Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   EMO94_RS08670 Genome accession   NZ_CP035005
Coordinates   1680740..1681309 (-) Length   189 a.a.
NCBI ID   WP_000872879.1    Uniprot ID   A0A2S6DF07
Organism   Staphylococcus aureus strain PCFH-226     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1675740..1686309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EMO94_RS08625 - 1676214..1676822 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  EMO94_RS08630 rplL 1676997..1677365 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  EMO94_RS08635 rplJ 1677408..1677908 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  EMO94_RS08645 rplA 1678180..1678872 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  EMO94_RS08650 rplK 1679080..1679502 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  EMO94_RS08655 nusG 1679683..1680231 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  EMO94_RS08660 secE 1680244..1680426 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  EMO94_RS08665 rpmG 1680482..1680625 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  EMO94_RS08670 sigH 1680740..1681309 (-) 570 WP_000872879.1 sigma-70 family RNA polymerase sigma factor Regulator
  EMO94_RS08675 - 1681391..1681915 (-) 525 WP_000664738.1 NYN domain-containing protein -
  EMO94_RS08680 rlmB 1681915..1682661 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  EMO94_RS08685 - 1682669..1683073 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  EMO94_RS08690 cysS 1683066..1684466 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  EMO94_RS08695 cysE 1684450..1685097 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.02 Da        Isoelectric Point: 9.7681

>NTDB_id=333945 EMO94_RS08670 WP_000872879.1 1680740..1681309(-) (sigH) [Staphylococcus aureus strain PCFH-226]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=333945 EMO94_RS08670 WP_000872879.1 1680740..1681309(-) (sigH) [Staphylococcus aureus strain PCFH-226]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6DF07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment