Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EMO94_RS03370 Genome accession   NZ_CP035005
Coordinates   617081..617767 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PCFH-226     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 612081..622767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EMO94_RS03335 yqeH 612608..613708 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  EMO94_RS03340 aroE 613722..614528 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  EMO94_RS03345 yhbY 614532..614822 (+) 291 WP_128382608.1 ribosome assembly RNA-binding protein YhbY -
  EMO94_RS03350 nadD 614825..615394 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  EMO94_RS03355 yqeK 615384..615968 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  EMO94_RS03360 rsfS 615969..616322 (+) 354 WP_001088020.1 ribosome silencing factor -
  EMO94_RS03365 - 616325..617041 (+) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  EMO94_RS03370 comEA 617081..617767 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  EMO94_RS03375 - 617859..618320 (+) 462 WP_000439690.1 ComE operon protein 2 -
  EMO94_RS03380 comEC 618325..620526 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EMO94_RS03385 holA 620583..621557 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  EMO94_RS03390 rpsT 621602..621853 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=333924 EMO94_RS03370 WP_001825349.1 617081..617767(+) (comEA) [Staphylococcus aureus strain PCFH-226]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=333924 EMO94_RS03370 WP_001825349.1 617081..617767(+) (comEA) [Staphylococcus aureus strain PCFH-226]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment