Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   FWK62_RS04120 Genome accession   NZ_CP042993
Coordinates   799840..801846 (+) Length   668 a.a.
NCBI ID   WP_132995375.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 794840..806846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK62_RS04090 (FWK62_04090) tatA 795169..795390 (+) 222 WP_132995367.1 Sec-independent protein translocase subunit TatA -
  FWK62_RS04095 (FWK62_04095) tatB 795394..795948 (+) 555 WP_147590339.1 Sec-independent protein translocase protein TatB -
  FWK62_RS04100 (FWK62_04100) tatC 795945..796682 (+) 738 WP_132995369.1 twin-arginine translocase subunit TatC -
  FWK62_RS04105 (FWK62_04105) hemB 796748..797770 (+) 1023 WP_011608705.1 porphobilinogen synthase -
  FWK62_RS04110 (FWK62_04110) purT 797827..799008 (-) 1182 WP_132995371.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FWK62_RS04115 (FWK62_04115) luxS 799047..799553 (-) 507 WP_132995373.1 S-ribosylhomocysteine lyase Regulator
  FWK62_RS04120 (FWK62_04120) recP/tkt 799840..801846 (+) 2007 WP_132995375.1 transketolase Machinery gene
  FWK62_RS04125 (FWK62_04125) pyrG 802073..803701 (+) 1629 WP_132995377.1 glutamine hydrolyzing CTP synthase -
  FWK62_RS04130 (FWK62_04130) - 803749..805585 (-) 1837 Protein_806 acyltransferase family protein -
  FWK62_RS04135 (FWK62_04135) pyrG 805629..805800 (+) 172 Protein_807 CTP synthetase -
  FWK62_RS10325 - 806041..806460 (+) 420 WP_187378118.1 hypothetical protein -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 73386.14 Da        Isoelectric Point: 5.9966

>NTDB_id=333917 FWK62_RS04120 WP_132995375.1 799840..801846(+) (recP/tkt) [Histophilus somni strain UOC-KLM-ATR-014]
MVTRKELANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPTNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLSIEDLKQFRQLHSKTPGHPEYGYAPGVETTTGPLGQGITNAVGMAIAEKTLAAQFNREGHEIVDHHTYVFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTQKRFEAYGWHVIPAVNGHNAEQIVGAIKQAQAEKNKPTL
IMCKTIIGYGSPNKQNTHDSHGAPLGDEEIALTRQALNWNYAPFEIPADIYAKWNAHEKGQVAENAWNEKFAAYEKAYPE
LAVEFKRRLNGELPANWATESQAFIEKLQANPASIASRKASQNAIEAYAKLLPEFLGGSADLAGSNLTLWSGSKPIRATE
NVDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFMEYAHNAVRMAALMKQRSLFVYTHDSIGLGEDGPTHQPVEQ
TTALRLIPNLETWRPCDQVESAIAWKAAVERQDGPSALIFTRQNLAQMNRTSEQLENVKRGGYILRACCEKGDCPDLILI
ATGSEVELAMKAAEVLDAEGVKVRVVSMPSTNVFDKQDVAYREAVLPSAVTKRVAIEAGISDFWYKYVGTNGRIVGMNSF
GESAPADQLFKLFGFTVENIVAKAKEIL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=333917 FWK62_RS04120 WP_132995375.1 799840..801846(+) (recP/tkt) [Histophilus somni strain UOC-KLM-ATR-014]
ATGGTAACTCGTAAAGAATTGGCAAATGCAATCCGTTTTTTAAGCATGGATGCAGTACAAAAAGCAAAATCTGGGCATCC
GGGAGCTCCGATGGGAATGGCAGATATTGCGGAAGTATTATGGCGTGATTTTTTAAACCATAATCCAACTAATCCTCAAT
GGGCAAATCGTGATCGTTTTGTGTTATCTAACGGTCATGGCTCAATGTTAATTTATAGTTTACTTCATCTCACCGGTTAC
GATCTTTCTATCGAAGATTTAAAACAATTCCGTCAATTACATTCCAAAACACCAGGACACCCTGAATATGGTTATGCACC
AGGTGTTGAAACTACAACGGGACCRTTAGGTCAAGGGATCACCAATGCAGTCGGTATGGCGATTGCAGAAAAAACGTTAG
CCGCACAATTTAACCGAGAAGGTCATGAAATTGTCGATCATCACACTTATGTTTTTTTAGGTGATGGCTGTTTAATGGAA
GGTATTTCTCATGAGGCTTGTTCATTAGCCGGTACGTTAGGTTTGGGTAAATTGATTGCGTTCTATGATGACAATAATAT
CTCAATTGACGGTCATGTTGACGGTTGGTTTACTGATGATACACAAAAACGCTTTGAGGCTTACGGCTGGCATGTTATTC
CTGCTGTTAATGGTCATAATGCGGAACAAATTGTTGGTGCAATAAAACAAGCTCAGGCTGAGAAAAATAAACCAACTTTA
ATTATGTGTAAGACTATCATTGGTTATGGTTCTCCAAATAAGCAAAATACTCATGATAGCCATGGTGCACCTTTGGGCGA
TGAAGAAATCGCTTTAACTCGTCAAGCATTAAATTGGAATTACGCACCTTTTGAAATTCCTGCTGATATTTATGCAAAAT
GGAATGCTCACGAAAAAGGACAAGTGGCGGAAAACGCATGGAATGAAAAATTTGCCGCTTATGAGAAAGCTTATCCTGAA
TTAGCGGTTGAATTTAAACGCCGTTTAAATGGGGAATTACCGGCAAACTGGGCAACAGAAAGCCAAGCCTTTATTGAAAA
ATTACAAGCAAATCCAGCCAGCATTGCAAGTCGCAAAGCGTCACAAAATGCGATTGAAGCGTATGCAAAATTATTACCGG
AATTTTTAGGCGGGTCAGCTGATTTAGCGGGGTCAAACTTAACGTTATGGTCTGGTTCAAAACCCATTCGTGCGACAGAA
AATGTAGACGGTAATTATATTAATTATGGCGTGCGTGAATTCGGAATGTCTGCCATCATGAATGGTATTGCATTGCACGG
CGGATTTATTCCTTATGGTGCAACGTTCTTAATGTTTATGGAATATGCACATAATGCAGTGCGTATGGCAGCCTTGATGA
AACAGCGTTCATTATTTGTTTATACACATGACTCTATCGGTTTAGGAGAAGACGGCCCGACGCATCAACCTGTTGAGCAA
ACAACCGCACTTCGCTTAATTCCAAATTTAGAAACATGGCGTCCTTGTGACCAAGTGGAATCTGCAATCGCATGGAAAGC
GGCGGTTGAACGTCAAGATGGTCCAAGTGCATTAATTTTCACTCGACAAAATCTTGCTCAAATGAACCGCACTTCTGAAC
AATTGGAAAACGTGAAACGTGGCGGTTATATCTTGCGTGCATGCTGTGAAAAGGGTGATTGTCCGGATTTAATCTTGATC
GCCACTGGTTCCGAAGTGGAATTAGCGATGAAAGCAGCGGAAGTGTTAGATGCGGAAGGCGTGAAAGTTCGTGTAGTATC
AATGCCGAGTACGAATGTATTTGATAAACAAGATGTTGCGTATCGTGAGGCAGTGTTACCAAGTGCGGTAACTAAACGAG
TTGCAATTGAAGCGGGTATTTCAGATTTCTGGTACAAATATGTTGGTACCAACGGACGTATCGTTGGTATGAATAGCTTC
GGTGAATCAGCACCGGCAGATCAACTGTTTAAACTCTTTGGCTTCACTGTTGAAAATATTGTGGCAAAGGCAAAAGAGAT
TTTATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-526)

Transketolase, C-terminal domain (Transketolase_C)

(555-660)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.343

99.401

0.481