Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FWK62_RS04115 Genome accession   NZ_CP042993
Coordinates   799047..799553 (-) Length   168 a.a.
NCBI ID   WP_132995373.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-014     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 794047..804553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK62_RS04090 (FWK62_04090) tatA 795169..795390 (+) 222 WP_132995367.1 Sec-independent protein translocase subunit TatA -
  FWK62_RS04095 (FWK62_04095) tatB 795394..795948 (+) 555 WP_147590339.1 Sec-independent protein translocase protein TatB -
  FWK62_RS04100 (FWK62_04100) tatC 795945..796682 (+) 738 WP_132995369.1 twin-arginine translocase subunit TatC -
  FWK62_RS04105 (FWK62_04105) hemB 796748..797770 (+) 1023 WP_011608705.1 porphobilinogen synthase -
  FWK62_RS04110 (FWK62_04110) purT 797827..799008 (-) 1182 WP_132995371.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FWK62_RS04115 (FWK62_04115) luxS 799047..799553 (-) 507 WP_132995373.1 S-ribosylhomocysteine lyase Regulator
  FWK62_RS04120 (FWK62_04120) recP/tkt 799840..801846 (+) 2007 WP_132995375.1 transketolase Machinery gene
  FWK62_RS04125 (FWK62_04125) pyrG 802073..803701 (+) 1629 WP_132995377.1 glutamine hydrolyzing CTP synthase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18968.57 Da        Isoelectric Point: 5.2115

>NTDB_id=333916 FWK62_RS04115 WP_132995373.1 799047..799553(-) (luxS) [Histophilus somni strain UOC-KLM-ATR-014]
MPLLDSFKVDHTRMNAPAVRVAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNSEQIEIIDISP
MGCRTGFYMSLIGTPNEQQVANAWSASMQDILNVKNQAEIPELNEYQCGTYTEHSLEDAHNIARNILNRGISINKNDDLL
LDDTLLNS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=333916 FWK62_RS04115 WP_132995373.1 799047..799553(-) (luxS) [Histophilus somni strain UOC-KLM-ATR-014]
ATGCCACTACTTGACAGTTTTAAAGTTGATCACACAAGAATGAATGCTCCTGCTGTGCGTGTTGCAAAAACAATGCGAAC
ACCAAAAGGCGACAATATCACTGTTTTTGATCTTCGTTTTTGTATTCCTAATAAAGAAATCCTCTCTCCTAAAGGCATTC
ACACTTTAGAACACTTATTCGCAGGATTTATGCGTGATCACTTAAATAGTGAACAAATTGAAATTATTGATATTTCGCCT
ATGGGATGCCGAACCGGATTTTATATGTCATTAATTGGCACACCAAATGAACAACAAGTTGCAAACGCTTGGTCAGCTTC
AATGCAAGATATTTTAAACGTCAAAAATCAAGCCGAAATTCCTGAACTAAACGAATATCAATGTGGAACCTATACTGAAC
ATTCATTGGAAGATGCACATAATATTGCACGGAATATTCTTAATCGAGGCATAAGCATTAATAAAAATGACGATCTGCTT
TTAGATGATACTTTACTCAATTCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.251

99.405

0.738

Multiple sequence alignment