Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EMO94_RS00895 Genome accession   NZ_CP035005
Coordinates   158165..158560 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PCFH-226     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 153165..163560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EMO94_RS00860 - 154334..154738 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  EMO94_RS00875 - 155391..155624 (+) 234 WP_000384523.1 DUF1146 family protein -
  EMO94_RS00880 murA 155735..157000 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EMO94_RS00885 fabZ 157034..157474 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EMO94_RS00890 - 157531..157971 (-) 441 WP_000846746.1 YwpF-like family protein -
  EMO94_RS00895 ssb 158165..158560 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  EMO94_RS00900 sceD 158949..159644 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  EMO94_RS00905 tenA 160031..160720 (+) 690 WP_000396068.1 thiaminase II -
  EMO94_RS00910 thiD 160713..161543 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EMO94_RS00915 thiM 161527..162318 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  EMO94_RS00920 thiE 162320..162961 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=333913 EMO94_RS00895 WP_000932694.1 158165..158560(+) (ssb) [Staphylococcus aureus strain PCFH-226]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=333913 EMO94_RS00895 WP_000932694.1 158165..158560(+) (ssb) [Staphylococcus aureus strain PCFH-226]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment