Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SPT_RS07505 Genome accession   NC_012469
Coordinates   1439828..1441060 (-) Length   410 a.a.
NCBI ID   WP_001839487.1    Uniprot ID   -
Organism   Streptococcus pneumoniae Taiwan19F-14     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434828..1446060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPT_RS07475 (SPT_1503) - 1435015..1435983 (+) 969 WP_000081004.1 NAD(P)/FAD-dependent oxidoreductase -
  SPT_RS07480 (SPT_1504) whiA 1436017..1436928 (-) 912 WP_000011306.1 DNA-binding protein WhiA -
  SPT_RS07485 (SPT_1505) - 1436925..1437902 (-) 978 WP_001231086.1 YvcK family protein -
  SPT_RS07490 (SPT_1506) rapZ 1437899..1438789 (-) 891 WP_000163033.1 RNase adapter RapZ -
  SPT_RS07495 (SPT_1507) - 1438841..1439221 (-) 381 WP_001140420.1 RidA family protein -
  SPT_RS07500 (SPT_1508) yihA 1439232..1439819 (-) 588 WP_000422605.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SPT_RS07505 (SPT_1509) clpX 1439828..1441060 (-) 1233 WP_001839487.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SPT_RS07510 (SPT_1510) - 1441097..1441267 (-) 171 WP_000442260.1 hypothetical protein -
  SPT_RS07515 (SPT_1511) - 1441267..1441773 (-) 507 WP_000162453.1 dihydrofolate reductase -
  SPT_RS07520 (SPT_1512) - 1441903..1442421 (-) 519 WP_000229861.1 DNA starvation/stationary phase protection protein -
  SPT_RS07525 (SPT_1513) lytC 1442921..1444435 (-) 1515 WP_078134694.1 choline binding-anchored murein hydrolase LytC -
  SPT_RS07530 (SPT_1514) tpiA 1444473..1445231 (-) 759 WP_000087891.1 triose-phosphate isomerase -
  SPT_RS07535 (SPT_1515) - 1445329..1446006 (-) 678 WP_000221598.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45696.21 Da        Isoelectric Point: 4.4240

>NTDB_id=33391 SPT_RS07505 WP_001839487.1 1439828..1441060(-) (clpX) [Streptococcus pneumoniae Taiwan19F-14]
MPTTRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=33391 SPT_RS07505 WP_001839487.1 1439828..1441060(-) (clpX) [Streptococcus pneumoniae Taiwan19F-14]
ATGCCTACAACTAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATCGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCAGTTTACAACCACTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATTTTGATGATTGGGCCAACTGGTTCAGGGAAAACTTTCCTTGCTCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCGATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTTAAACTCTTGCAGGCTGCTGACTTTAACATTGAGCGCGCAGAGCGTGGGATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAACGTGTCTATCACACGGGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAAGGAACAGTTGCTAGCGTACCACCTCAAGGTGGACGCAAACATCCGCAACAAGAGATGATTCAAGTAGATACC
AAGAATATCCTCTTCATTGTTGGTGGTGCCTTTGATGGTATTGAAGAAATTGTCAAGCAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCTTACATGCAAGAAATCATCGCTGAAGATATTCAAAAAT
TTGGGATTATCCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCGGCTCTTGAGCAATTAACAGTCGATGACTTGGTTCGT
ATTTTGAAAGAACCAAGAAATGCCTTGGTCAAACAGTACCAAACCTTGCTTTCTTATGATGATGTCGAGTTGGAATTTGA
CGACGAAGCCCTTCAGGAAATTGCCAATAAGGCCATCGAACGGAAGACAGGGGCGCGTGGTCTTCGCTCGATTATCGAGG
AAACCATGCTAGATGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTCCGCATCACTAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment