NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	FWK62_RS00795	Genome accession	NZ_CP042993
Coordinates	143825..144493 (+)	Length	222 a.a.
NCBI ID	WP_011608296.1	Uniprot ID	B0UUW7
Organism	Histophilus somni strain UOC-KLM-ATR-014
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 138825..149493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FWK62_RS00765 (FWK62_00765)	recF	139266..140342 (+)	1077	WP_132994585.1	DNA replication/repair protein RecF	-
FWK62_RS00770 (FWK62_00770)	crp	140399..141043 (-)	645	WP_011608291.1	cAMP-activated global transcriptional regulator CRP	Regulator
FWK62_RS00775 (FWK62_00775)	-	141056..141280 (-)	225	WP_012341336.1	YheU family protein	-
FWK62_RS00780 (FWK62_00780)	slmA	141315..141974 (-)	660	WP_011608293.1	nucleoid occlusion factor SlmA	-
FWK62_RS00785 (FWK62_00785)	dut	141974..142429 (-)	456	WP_011608294.1	dUTP diphosphatase	-
FWK62_RS00790 (FWK62_00790)	coaBC	142426..143652 (-)	1227	WP_132994586.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FWK62_RS00795 (FWK62_00795)	radC	143825..144493 (+)	669	WP_011608296.1	DNA repair protein RadC	Machinery gene
FWK62_RS00800 (FWK62_00800)	rpmB	144714..144950 (+)	237	WP_011608297.1	50S ribosomal protein L28	-
FWK62_RS00805 (FWK62_00805)	rpmG	144962..145132 (+)	171	WP_005542835.1	50S ribosomal protein L33	-
FWK62_RS00810 (FWK62_00810)	mutM	145237..146049 (+)	813	WP_011608298.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
FWK62_RS00815 (FWK62_00815)	ilvG	146141..147817 (+)	1677	WP_132994587.1	acetolactate synthase 2 catalytic subunit	-
FWK62_RS00820 (FWK62_00820)	ilvM	147821..148039 (+)	219	WP_011608300.1	acetolactate synthase 2 small subunit	-
FWK62_RS00825 (FWK62_00825)	-	148105..148767 (+)	663	WP_012340638.1	MOSC domain-containing protein	-
FWK62_RS00830 (FWK62_00830)	-	148884..149387 (+)	504	WP_011608302.1	chorismate lyase	-

Sequence

Protein

Download Length: 222 a.a. Molecular weight: 25553.76 Da Isoelectric Point: 7.3730

                                >NTDB_id=333893 FWK62_RS00795 WP_011608296.1 143825..144493(+) (radC) [Histophilus somni strain UOC-KLM-ATR-014]

MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL

QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL

FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide

Download Length: 669 bp

                                >NTDB_id=333893 FWK62_RS00795 WP_011608296.1 143825..144493(+) (radC) [Histophilus somni strain UOC-KLM-ATR-014]

ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT

ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT

CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA

CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACAGT

TCGTATGTATTTACAGACTGAATTGGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT

TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACAGCACTA

TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT

GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT

TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(101-220)

UPF0758 N-terminal (UPF0758_N)

(8-75)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	B0UUW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Haemophilus influenzae Rd KW20	64.815	97.297	0.631

Detailed information NTG0333893