Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EMO93_RS04665 Genome accession   NZ_CP035003
Coordinates   929235..929630 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PCFA-221     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 924235..934630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EMO93_RS04640 thiE 924834..925475 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  EMO93_RS04645 thiM 925477..926268 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  EMO93_RS04650 thiD 926252..927082 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  EMO93_RS04655 tenA 927075..927764 (-) 690 WP_000396068.1 thiaminase II -
  EMO93_RS04660 sceD 928151..928846 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  EMO93_RS04665 ssb 929235..929630 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  EMO93_RS04670 - 929824..930264 (+) 441 WP_000846746.1 YwpF-like family protein -
  EMO93_RS04675 fabZ 930321..930761 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  EMO93_RS04680 murA 930795..932060 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EMO93_RS04685 - 932171..932404 (-) 234 WP_000384523.1 DUF1146 family protein -
  EMO93_RS04700 - 933057..933461 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=333892 EMO93_RS04665 WP_000932694.1 929235..929630(-) (ssb) [Staphylococcus aureus strain PCFA-221]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=333892 EMO93_RS04665 WP_000932694.1 929235..929630(-) (ssb) [Staphylococcus aureus strain PCFA-221]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment