Detailed information NTG0333882

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: FWK61_RS09025
• Genome accession: NZ_CP042992
• Coordinates: 1968391..1969059 (-)
• Length: 222 a.a.
• NCBI ID: WP_011608296.1
• Uniprot ID: B0UUW7
• Organism: Histophilus somni strain UOC-KLM-ATR-013
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1963391..1974059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FWK61_RS08990 (FWK61_08990)	-	1963497..1964000 (-)	504	WP_011608302.1	chorismate lyase	-
FWK61_RS08995 (FWK61_08995)	-	1964117..1964779 (-)	663	WP_012340638.1	MOSC domain-containing protein	-
FWK61_RS09000 (FWK61_09000)	ilvM	1964845..1965063 (-)	219	WP_011608300.1	acetolactate synthase 2 small subunit	-
FWK61_RS09005 (FWK61_09005)	ilvG	1965067..1966743 (-)	1677	WP_132994587.1	acetolactate synthase 2 catalytic subunit	-
FWK61_RS09010 (FWK61_09010)	mutM	1966835..1967647 (-)	813	WP_011608298.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
FWK61_RS09015 (FWK61_09015)	rpmG	1967752..1967922 (-)	171	WP_005542835.1	50S ribosomal protein L33	-
FWK61_RS09020 (FWK61_09020)	rpmB	1967934..1968170 (-)	237	WP_011608297.1	50S ribosomal protein L28	-
FWK61_RS09025 (FWK61_09025)	radC	1968391..1969059 (-)	669	WP_011608296.1	DNA repair protein RadC	Machinery gene
FWK61_RS09030 (FWK61_09030)	coaBC	1969232..1970458 (+)	1227	WP_132994586.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FWK61_RS09035 (FWK61_09035)	dut	1970455..1970910 (+)	456	WP_011608294.1	dUTP diphosphatase	-
FWK61_RS09040 (FWK61_09040)	slmA	1970910..1971569 (+)	660	WP_011608293.1	nucleoid occlusion factor SlmA	-
FWK61_RS09045 (FWK61_09045)	-	1971604..1971828 (+)	225	WP_012341336.1	YheU family protein	-
FWK61_RS09050 (FWK61_09050)	crp	1971841..1972485 (+)	645	WP_011608291.1	cAMP-activated global transcriptional regulator CRP	Regulator
FWK61_RS09055 (FWK61_09055)	recF	1972542..1973618 (-)	1077	WP_132994585.1	DNA replication/repair protein RecF	-

Sequence

Protein

• Length: 222 a.a.
• Molecular weight: 25553.76 Da
• Isoelectric Point: 7.3730

>NTDB_id=333882 FWK61_RS09025 WP_011608296.1 1968391..1969059(-) (radC) [Histophilus somni strain UOC-KLM-ATR-013]
MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL
QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL
FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide

• Length: 669 bp

>NTDB_id=333882 FWK61_RS09025 WP_011608296.1 1968391..1969059(-) (radC) [Histophilus somni strain UOC-KLM-ATR-013]
ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT
ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT
CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA
CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACAGT
TCGTATGTATTTACAGACTGAATTGGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT
TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACAGCACTA
TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT
GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT
TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (101-220)

• UPF0758 N-terminal (UPF0758_N) (8-75)

3D structure

• AlphaFold DB: B0UUW7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	64.815	97.297	0.631