Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EMO93_RS02190 Genome accession   NZ_CP035003
Coordinates   470029..470715 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PCFA-221     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 465029..475715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EMO93_RS02170 rpsT 465943..466194 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  EMO93_RS02175 holA 466239..467213 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  EMO93_RS02180 comEC 467270..469471 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EMO93_RS02185 - 469476..469937 (-) 462 WP_000439690.1 ComE operon protein 2 -
  EMO93_RS02190 comEA 470029..470715 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  EMO93_RS02195 - 470755..471471 (-) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  EMO93_RS02200 rsfS 471474..471827 (-) 354 WP_001088020.1 ribosome silencing factor -
  EMO93_RS02205 yqeK 471828..472412 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  EMO93_RS02210 nadD 472402..472971 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  EMO93_RS02215 yhbY 472974..473264 (-) 291 WP_128382608.1 ribosome assembly RNA-binding protein YhbY -
  EMO93_RS02220 aroE 473268..474074 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  EMO93_RS02225 yqeH 474088..475188 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=333881 EMO93_RS02190 WP_001825349.1 470029..470715(-) (comEA) [Staphylococcus aureus strain PCFA-221]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=333881 EMO93_RS02190 WP_001825349.1 470029..470715(-) (comEA) [Staphylococcus aureus strain PCFA-221]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment