Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   FWK61_RS03510 Genome accession   NZ_CP042992
Coordinates   766527..767312 (-) Length   261 a.a.
NCBI ID   WP_132994605.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-013     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 761527..772312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK61_RS03480 (FWK61_03480) - 761648..762511 (-) 864 WP_132994600.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  FWK61_RS03485 (FWK61_03485) aroB 762518..763606 (-) 1089 WP_132994601.1 3-dehydroquinate synthase -
  FWK61_RS03490 (FWK61_03490) aroK 763626..764153 (-) 528 WP_012340254.1 shikimate kinase AroK -
  FWK61_RS03495 (FWK61_03495) pilQ 764335..765321 (-) 987 Protein_676 type IV pilus secretin PilQ -
  FWK61_RS03500 (FWK61_03500) - 765483..765980 (-) 498 WP_132994603.1 competence protein -
  FWK61_RS03505 (FWK61_03505) - 765984..766523 (-) 540 WP_132994604.1 PilN domain-containing protein -
  FWK61_RS03510 (FWK61_03510) comA 766527..767312 (-) 786 WP_132994605.1 competence protein ComA Machinery gene
  FWK61_RS03515 (FWK61_03515) - 767437..769977 (+) 2541 WP_132994606.1 penicillin-binding protein 1A -
  FWK61_RS03520 (FWK61_03520) - 770037..770882 (+) 846 WP_132994607.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 31171.68 Da        Isoelectric Point: 7.2918

>NTDB_id=333849 FWK61_RS03510 WP_132994605.1 766527..767312(-) (comA) [Histophilus somni strain UOC-KLM-ATR-013]
MRPNKKTANILQIGIHRQDEQWQFLWFDEQKQPHFLTKNDNPPLKLSDLTPQFAKNICTWIACLPNQHVWVKTIILTQKL
NEQECQQQCNLIIENELPTDFGDIWYDYQYKELTQGAKLAIYVVRKQTAQNYVHRFFPIKINTLDCLSNSLLRAFHYFHP
PKEKMETLYLYQDRNGCIAIQEIGQQTIVLQKNDKNITALYQEFCQRFNCQPQQVWCYCEKNEQQNITHKWNIINTELPF
IALGNALWGRNELYQITELKE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=333849 FWK61_RS03510 WP_132994605.1 766527..767312(-) (comA) [Histophilus somni strain UOC-KLM-ATR-013]
ATGAGACCTAACAAAAAAACAGCAAATATTTTACAAATTGGTATTCATAGACAAGATGAACAATGGCAATTCCTCTGGTT
TGATGAACAAAAACAACCGCACTTTTTAACTAAAAACGATAATCCCCCTCTTAAACTATCTGATTTGACACCACAATTCG
CAAAGAATATCTGCACATGGATAGCCTGTTTACCCAATCAGCACGTCTGGGTAAAAACAATCATATTGACGCAAAAGTTA
AATGAGCAAGAATGCCAACAACAATGTAACTTAATCATAGAAAATGAATTGCCGACAGATTTCGGTGATATTTGGTACGA
CTACCAATATAAAGAATTAACACAAGGTGCAAAACTGGCTATCTATGTTGTTAGAAAACAAACAGCTCAAAATTATGTGC
ATCGTTTTTTCCCTATAAAAATTAATACGTTAGATTGCTTAAGCAATAGCCTACTACGAGCATTCCATTATTTTCACCCC
CCAAAAGAAAAGATGGAAACATTATATTTATATCAGGATCGTAACGGCTGTATAGCAATACAAGAAATCGGACAACAAAC
AATCGTTCTACAAAAAAATGACAAAAATATTACCGCACTTTATCAAGAATTCTGCCAACGTTTTAACTGCCAACCTCAAC
AAGTTTGGTGCTATTGTGAAAAAAATGAACAACAAAATATCACTCATAAATGGAACATCATTAATACCGAATTGCCTTTT
ATTGCTTTAGGAAATGCTCTTTGGGGAAGAAATGAACTCTATCAAATAACGGAATTAAAGGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

40.698

98.851

0.402
  comA Haemophilus influenzae Rd KW20

39.535

98.851

0.391