Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EOK76_RS14690 Genome accession   NZ_CP034973
Coordinates   3052306..3052902 (-) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain ALAC-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3047306..3057902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EOK76_RS14660 (EOK76_g3116) - 3047372..3047767 (+) 396 WP_003584064.1 hypothetical protein -
  EOK76_RS14665 (EOK76_g3117) - 3048164..3048757 (+) 594 WP_016381922.1 TMEM175 family protein -
  EOK76_RS14670 (EOK76_g3118) - 3048830..3049024 (-) 195 WP_016368469.1 hypothetical protein -
  EOK76_RS14675 (EOK76_g3119) cydB 3049051..3050070 (-) 1020 WP_260565544.1 cytochrome d ubiquinol oxidase subunit II -
  EOK76_RS14680 (EOK76_g3120) - 3050063..3051541 (-) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  EOK76_RS14685 (EOK76_g3121) rpsR 3051983..3052219 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  EOK76_RS14690 (EOK76_g3122) ssb 3052306..3052902 (-) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  EOK76_RS14695 (EOK76_g3123) rpsF 3052933..3053229 (-) 297 WP_003568460.1 30S ribosomal protein S6 -
  EOK76_RS14700 (EOK76_g3124) ssb 3053357..3053788 (-) 432 WP_003568458.1 single-stranded DNA-binding protein -
  EOK76_RS14705 (EOK76_g3125) deoC 3053971..3054675 (+) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  EOK76_RS14710 (EOK76_g3126) gyrA 3054780..3057401 (-) 2622 WP_003584054.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=333834 EOK76_RS14690 WP_003568462.1 3052306..3052902(-) (ssb) [Lacticaseibacillus paracasei strain ALAC-4]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=333834 EOK76_RS14690 WP_003568462.1 3052306..3052902(-) (ssb) [Lacticaseibacillus paracasei strain ALAC-4]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTTACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485

Multiple sequence alignment