NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	FWK55_RS08885	Genome accession	NZ_CP042990
Coordinates	1968359..1969027 (-)	Length	222 a.a.
NCBI ID	WP_011608296.1	Uniprot ID	B0UUW7
Organism	Histophilus somni strain UOC-KLM-ATR-011
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1963359..1974027

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FWK55_RS08850 (FWK55_08850)	-	1963464..1963967 (-)	504	WP_136122231.1	chorismate lyase	-
FWK55_RS08855 (FWK55_08855)	-	1964084..1964746 (-)	663	WP_075293532.1	MOSC domain-containing protein	-
FWK55_RS08860 (FWK55_08860)	ilvM	1964812..1965030 (-)	219	WP_011608300.1	acetolactate synthase 2 small subunit	-
FWK55_RS08865 (FWK55_08865)	ilvG	1965034..1966710 (-)	1677	WP_012340456.1	acetolactate synthase 2 catalytic subunit	-
FWK55_RS08870 (FWK55_08870)	mutM	1966802..1967614 (-)	813	WP_075293533.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
FWK55_RS08875 (FWK55_08875)	rpmG	1967720..1967890 (-)	171	WP_005542835.1	50S ribosomal protein L33	-
FWK55_RS08880 (FWK55_08880)	rpmB	1967902..1968138 (-)	237	WP_011608297.1	50S ribosomal protein L28	-
FWK55_RS08885 (FWK55_08885)	radC	1968359..1969027 (-)	669	WP_011608296.1	DNA repair protein RadC	Machinery gene
FWK55_RS08890 (FWK55_08890)	coaBC	1969200..1970426 (+)	1227	WP_075293534.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FWK55_RS08895 (FWK55_08895)	dut	1970423..1970878 (+)	456	WP_011608294.1	dUTP diphosphatase	-
FWK55_RS08900 (FWK55_08900)	slmA	1970878..1971537 (+)	660	WP_011608293.1	nucleoid occlusion factor SlmA	-
FWK55_RS08905 (FWK55_08905)	-	1971572..1971796 (+)	225	WP_012341336.1	YheU family protein	-
FWK55_RS08910 (FWK55_08910)	crp	1971809..1972453 (+)	645	WP_011608291.1	cAMP-activated global transcriptional regulator CRP	Regulator
FWK55_RS08915 (FWK55_08915)	recF	1972510..1973586 (-)	1077	WP_075293535.1	DNA replication/repair protein RecF	-

Sequence

Protein

Download Length: 222 a.a. Molecular weight: 25553.76 Da Isoelectric Point: 7.3730

                                >NTDB_id=333772 FWK55_RS08885 WP_011608296.1 1968359..1969027(-) (radC) [Histophilus somni strain UOC-KLM-ATR-011]

MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL

QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL

FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide

Download Length: 669 bp

                                >NTDB_id=333772 FWK55_RS08885 WP_011608296.1 1968359..1969027(-) (radC) [Histophilus somni strain UOC-KLM-ATR-011]

ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT

ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT

CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA

CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACGGT

TCGTATGTATTTACAGACTGAATTGGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT

TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACCGCACTA

TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT

GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT

TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(101-220)

UPF0758 N-terminal (UPF0758_N)

(8-75)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	B0UUW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Haemophilus influenzae Rd KW20	64.815	97.297	0.631

Detailed information NTG0333772