Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VVMO6_RS14100 Genome accession   NC_014965
Coordinates   3020303..3020977 (-) Length   224 a.a.
NCBI ID   WP_011078895.1    Uniprot ID   Q7MPS7
Organism   Vibrio vulnificus MO6-24/O     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3015303..3025977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVMO6_RS14070 (VVM_04397) coaD 3015348..3015842 (+) 495 WP_011078889.1 pantetheine-phosphate adenylyltransferase -
  VVMO6_RS14075 (VVM_04398) - 3015919..3017895 (-) 1977 WP_013572549.1 LTA synthase family protein -
  VVMO6_RS14080 (VVM_04399) mutM 3018042..3018851 (-) 810 WP_013572550.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  VVMO6_RS14085 (VVM_04400) - 3018881..3019378 (-) 498 WP_011078892.1 hypothetical protein -
  VVMO6_RS14090 (VVM_04401) rpmG 3019569..3019739 (-) 171 WP_011078893.1 50S ribosomal protein L33 -
  VVMO6_RS14095 (VVM_04402) rpmB 3019755..3019991 (-) 237 WP_011078894.1 50S ribosomal protein L28 -
  VVMO6_RS14100 (VVM_04403) radC 3020303..3020977 (-) 675 WP_011078895.1 DNA repair protein RadC Machinery gene
  VVMO6_RS14105 (VVM_04404) - 3021091..3022758 (-) 1668 WP_013572551.1 methyl-accepting chemotaxis protein -
  VVMO6_RS14110 (VVM_04405) coaBC 3023040..3024245 (+) 1206 WP_013572552.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  VVMO6_RS14115 (VVM_04406) slmA 3024396..3024986 (+) 591 WP_011078898.1 nucleoid occlusion factor SlmA -
  VVMO6_RS14120 (VVM_04407) - 3024990..3025928 (+) 939 WP_013572553.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25340.02 Da        Isoelectric Point: 7.5165

>NTDB_id=33372 VVMO6_RS14100 WP_011078895.1 3020303..3020977(-) (radC) [Vibrio vulnificus MO6-24/O]
MSLKNLPSESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=33372 VVMO6_RS14100 WP_011078895.1 3020303..3020977(-) (radC) [Vibrio vulnificus MO6-24/O]
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGAGAAAAGTTGCTTCAGCGAGGGCCTCAATCTTTGTCTGATGC
CGAGTTGCTTGCGATCTTTTTGCGAACAGGCACACAAGGAATGAACGTAATTGAACTCGCTGATTTTCTGCTGCGAGACT
TTGGTTCGCTGAGAAAACTCTTTTCTGCCGATGAACAGAGCTTTTGTCGTCACAAAGGATTGGGGCAGGCAAAGTACGTT
CAATTACAAGCTGTTTTGGAAATGACGCAACGTTATTTGGCCGAAACACTGCAACGTGGTGATGCGCTCACCAGTCCTCA
GCATACCAAGCTTTATCTCTCTTCCATGCTGCGCGATCGCCATCGAGAAGCGTTTTATGTGTTGTTCCTCGACAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGTACCATCGATGCCGCTTCGGTCTATCCTCGGGAAGTTGTTAAAAGA
GCCTTACACTATAATGCGGCAGCTTTAATATTGGCGCACAACCATCCCTCAGGCGTAGCAGAGCCAAGCCAAGCAGATCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTGGACCACTTTGTGGTGGGCGATGGGG
AAGTGGTTTCCTTTGCAGAAAGAGGCTGGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(4-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MPS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.241

96.429

0.513
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.5

100

0.375

Multiple sequence alignment