Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   EO946_RS17815 Genome accession   NZ_CP034943
Coordinates   3447668..3448825 (-) Length   385 a.a.
NCBI ID   WP_003219693.1    Uniprot ID   -
Organism   Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3442668..3453825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO946_RS17785 (EO946_17780) - 3442920..3443339 (-) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  EO946_RS17790 (EO946_17785) comFC 3443412..3444134 (-) 723 WP_013308058.1 ComF family protein Machinery gene
  EO946_RS17795 (EO946_17790) comFB 3444098..3444394 (-) 297 WP_003219707.1 late competence protein ComFB -
  EO946_RS17800 (EO946_17795) comFA 3444463..3445845 (-) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  EO946_RS17805 (EO946_17800) - 3445953..3446798 (-) 846 WP_003219702.1 DegV family protein -
  EO946_RS17810 (EO946_17805) degU 3446896..3447585 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EO946_RS17815 (EO946_17810) degS 3447668..3448825 (-) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator
  EO946_RS17820 (EO946_17815) - 3449041..3449694 (+) 654 WP_003219692.1 YigZ family protein -
  EO946_RS17825 (EO946_17820) - 3449694..3450818 (+) 1125 WP_003219689.1 LCP family protein -
  EO946_RS17830 (EO946_17825) - 3450892..3451968 (-) 1077 WP_003219687.1 MraY family glycosyltransferase -
  EO946_RS17835 (EO946_17830) tuaH 3452113..3453306 (-) 1194 WP_079996656.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44888.69 Da        Isoelectric Point: 6.2957

>NTDB_id=333613 EO946_RS17815 WP_003219693.1 3447668..3448825(-) (degS) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLSIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDKRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=333613 EO946_RS17815 WP_003219693.1 3447668..3448825(-) (degS) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
ATGAATAAAACAAAGATGGATTCCAAAGTTCTGGATTCTATTTTGATGAAGATGCTAAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTTGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTTATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGC
AATTTTCATAGGTTCAGTGAAGAAGAAATCCGCAATGCTTACGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAACTGCGGGAACGCCGGGATGATTTAGAGCGAAGATTGTTAGGCCTTCAGGAAATCATTGAGC
GGTCTGAATCATTAGTAAGCCAAATAACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAGGTCGGACTGCTTCTT
GCGGATGCTCAGGCAAAACAGGATTTCGGCTTAAGCATTATTGAGGCACAGGAAGAAGAGCGAAAAAGAGTCTCCAGAGA
AATTCACGACGGACCTGCTCAAATGCTGGCAAATGTGATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCTGAGGACGGATTCCAAGAAATTAAAAATCTCCGTCAAAATGTGCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAAGAATA
TAACGGAAAGGTCAAAATACATTTTCAGTGCATTGGTGAAACAGAGGATAAGCGGCTTGCGCCTCAGTTTGAAGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAACGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAAATT
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGAAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGTTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACCATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

99.481

100

0.995

Multiple sequence alignment