Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EO946_RS17790 Genome accession   NZ_CP034943
Coordinates   3443412..3444134 (-) Length   240 a.a.
NCBI ID   WP_013308058.1    Uniprot ID   E0U4A6
Organism   Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3438412..3449134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO946_RS17755 (EO946_17750) fliW 3438553..3438984 (-) 432 WP_003219723.1 flagellar assembly protein FliW -
  EO946_RS17760 (EO946_17755) - 3439005..3439580 (-) 576 WP_003219720.1 DUF6470 family protein -
  EO946_RS17765 (EO946_17760) flgL 3439627..3440523 (-) 897 WP_003219718.1 flagellar hook-associated protein FlgL -
  EO946_RS17770 (EO946_17765) flgK 3440533..3442056 (-) 1524 WP_003219716.1 flagellar hook-associated protein FlgK -
  EO946_RS17775 (EO946_17770) flgN 3442075..3442557 (-) 483 WP_003219714.1 flagellar protein FlgN -
  EO946_RS17780 (EO946_17775) flgM 3442573..3442839 (-) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  EO946_RS17785 (EO946_17780) - 3442920..3443339 (-) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  EO946_RS17790 (EO946_17785) comFC 3443412..3444134 (-) 723 WP_013308058.1 ComF family protein Machinery gene
  EO946_RS17795 (EO946_17790) comFB 3444098..3444394 (-) 297 WP_003219707.1 late competence protein ComFB -
  EO946_RS17800 (EO946_17795) comFA 3444463..3445845 (-) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  EO946_RS17805 (EO946_17800) - 3445953..3446798 (-) 846 WP_003219702.1 DegV family protein -
  EO946_RS17810 (EO946_17805) degU 3446896..3447585 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EO946_RS17815 (EO946_17810) degS 3447668..3448825 (-) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27297.64 Da        Isoelectric Point: 9.4915

>NTDB_id=333610 EO946_RS17790 WP_013308058.1 3443412..3444134(-) (comFC) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
MPNEAGGGIYKLICLLCDSPFSQAITWRALFLLKPEEKVCHTCRSKLKKITGHICTLCGRPQSVHAVCKDCEAWKSRVSD
SLLLRQNRSVYTYNDVMKETLSRFKFRGDAEIINAFKSDFSSTFSQVYPDKHFVLVPIPLSKEREEERGFNQARLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGRAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=333610 EO946_RS17790 WP_013308058.1 3443412..3444134(-) (comFC) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
ATGCCAAATGAAGCAGGAGGAGGCATTTATAAACTGATCTGTCTATTATGCGATTCGCCATTTTCTCAAGCTATTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGAAGAAAAGGTCTGCCATACCTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCACCCTGTGCGGCAGACCTCAATCCGTTCATGCGGTATGCAAAGATTGCGAAGCATGGAAATCAAGAGTCAGTGAC
AGCTTGCTGCTGCGCCAAAACCGTTCAGTTTACACATATAATGATGTGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGTGATTTTTCTTCAACCTTTTCACAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTTAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACGGCTCCTGGCAGAATGTTTA
GACCGGCCTATCCACCACCCCCTCATCCGCTTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGTCTGCTTTC
AGCGCGTATTTTTGATACAAAAAACAACTCAGCTGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAGAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0U4A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.417

100

0.904

Multiple sequence alignment