Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FWK48_RS06170 Genome accession   NZ_CP042987
Coordinates   1386713..1387219 (+) Length   168 a.a.
NCBI ID   WP_132995373.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-08     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381713..1392219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK48_RS06160 (FWK48_06160) pyrG 1382565..1384193 (-) 1629 WP_136121992.1 glutamine hydrolyzing CTP synthase -
  FWK48_RS06165 (FWK48_06165) recP/tkt 1384422..1386428 (-) 2007 WP_136121912.1 transketolase Machinery gene
  FWK48_RS06170 (FWK48_06170) luxS 1386713..1387219 (+) 507 WP_132995373.1 S-ribosylhomocysteine lyase Regulator
  FWK48_RS06175 (FWK48_06175) purT 1387258..1388439 (+) 1182 WP_132995371.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FWK48_RS06180 (FWK48_06180) hemB 1388496..1389518 (-) 1023 WP_011608705.1 porphobilinogen synthase -
  FWK48_RS06185 (FWK48_06185) tatC 1389584..1390321 (-) 738 WP_132995369.1 twin-arginine translocase subunit TatC -
  FWK48_RS06190 (FWK48_06190) tatB 1390318..1390872 (-) 555 WP_012340787.1 Sec-independent protein translocase protein TatB -
  FWK48_RS06195 (FWK48_06195) tatA 1390876..1391097 (-) 222 WP_011608702.1 Sec-independent protein translocase subunit TatA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18968.57 Da        Isoelectric Point: 5.2115

>NTDB_id=333582 FWK48_RS06170 WP_132995373.1 1386713..1387219(+) (luxS) [Histophilus somni strain UOC-KLM-ATR-08]
MPLLDSFKVDHTRMNAPAVRVAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNSEQIEIIDISP
MGCRTGFYMSLIGTPNEQQVANAWSASMQDILNVKNQAEIPELNEYQCGTYTEHSLEDAHNIARNILNRGISINKNDDLL
LDDTLLNS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=333582 FWK48_RS06170 WP_132995373.1 1386713..1387219(+) (luxS) [Histophilus somni strain UOC-KLM-ATR-08]
ATGCCACTACTTGACAGTTTTAAAGTTGATCACACAAGAATGAATGCTCCTGCTGTGCGTGTTGCAAAAACAATGCGAAC
ACCAAAAGGCGACAATATCACTGTTTTTGATCTTCGTTTTTGTATTCCTAATAAAGAAATCCTCTCTCCTAAAGGCATTC
ACACTTTAGAACACTTATTCGCAGGATTTATGCGTGATCACTTAAATAGTGAACAAATTGAAATTATTGATATTTCGCCT
ATGGGATGCCGAACCGGATTTTATATGTCATTAATTGGCACACCAAATGAACAACAAGTTGCAAACGCTTGGTCAGCTTC
AATGCAAGATATTTTAAACGTCAAAAATCAAGCCGAAATTCCTGAACTAAACGAATATCAATGTGGAACCTATACTGAAC
ATTCATTGGAAGATGCACATAATATTGCACGGAATATTCTTAATCGAGGCATAAGCATTAATAAAAATGACGATCTGCTT
TTAGATGATACTTTACTCAATTCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.251

99.405

0.738

Multiple sequence alignment