Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   FWK48_RS06165 Genome accession   NZ_CP042987
Coordinates   1384422..1386428 (-) Length   668 a.a.
NCBI ID   WP_136121912.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1379422..1391428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK48_RS06150 (FWK48_06150) - 1379870..1380256 (-) 387 WP_222860226.1 restriction endonuclease subunit S -
  FWK48_RS06155 (FWK48_06155) - 1380680..1382517 (+) 1838 Protein_1191 acyltransferase family protein -
  FWK48_RS06160 (FWK48_06160) pyrG 1382565..1384193 (-) 1629 WP_136121992.1 glutamine hydrolyzing CTP synthase -
  FWK48_RS06165 (FWK48_06165) recP/tkt 1384422..1386428 (-) 2007 WP_136121912.1 transketolase Machinery gene
  FWK48_RS06170 (FWK48_06170) luxS 1386713..1387219 (+) 507 WP_132995373.1 S-ribosylhomocysteine lyase Regulator
  FWK48_RS06175 (FWK48_06175) purT 1387258..1388439 (+) 1182 WP_132995371.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FWK48_RS06180 (FWK48_06180) hemB 1388496..1389518 (-) 1023 WP_011608705.1 porphobilinogen synthase -
  FWK48_RS06185 (FWK48_06185) tatC 1389584..1390321 (-) 738 WP_132995369.1 twin-arginine translocase subunit TatC -
  FWK48_RS06190 (FWK48_06190) tatB 1390318..1390872 (-) 555 WP_012340787.1 Sec-independent protein translocase protein TatB -
  FWK48_RS06195 (FWK48_06195) tatA 1390876..1391097 (-) 222 WP_011608702.1 Sec-independent protein translocase subunit TatA -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 73461.20 Da        Isoelectric Point: 5.7960

>NTDB_id=333581 FWK48_RS06165 WP_136121912.1 1384422..1386428(-) (recP/tkt) [Histophilus somni strain UOC-KLM-ATR-08]
MVTRKELANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPTNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMAIAEKTLAAQFNRAGHDIVDHHTYVFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTQKRFEAYGWHVIPAVDGHNAEQIIEAIKQAQAEKNKPTL
IMCKTIIGYGSPNKQNTHDSHGAPLGDEEIALTRQALNWNYAPFEIPADIYAKWNAHEKGQVAENAWNEKFAAYEKAYPE
LAVEFKRRLNGELPANWATESQAFIEKLQANPANIASRKASQNAIEAYAKLLPEFLGGSADLAGSNLTLWSGSKPIRATE
NIDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFMEYAHNAVRMAALMKQRSLFVYTHDSIGLGEDGPTHQPVEQ
TTALRLIPNLETWRPCDQVESAIAWKAAVERQDGPSALIFTRQNLAQMNRTSEQLENVKRGGYILRACCEKGDCPDLILI
ATGSEVELAMKAAEALDAEGVKVRVVSMPSTNVFDKQDAAYREAVLPSAVTKRVAIEAGISDFWYKYVGFEGRIVGMNSF
GESAPADQLFKLFGFTVENIVAKAKEIL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=333581 FWK48_RS06165 WP_136121912.1 1384422..1386428(-) (recP/tkt) [Histophilus somni strain UOC-KLM-ATR-08]
ATGGTAACTCGTAAAGAATTGGCAAATGCAATCCGTTTTTTAAGCATGGATGCAGTACAAAAAGCAAAATCTGGGCATCC
GGGAGCTCCGATGGGAATGGCAGATATTGCGGAAGTATTATGGCGTGATTTTTTAAACCATAATCCAACTAATCCTCAAT
GGGCAAATCGTGATCGTTTTGTGTTATCTAACGGTCATGGCTCAATGTTAATTTATAGTTTATTGCATCTCACCGGTTAT
GATCTTTCTATCGAAGATTTAAAACAATTTCGTCAATTACATTCCAAGACTCCGGGGCACCCTGAATACGGTTATGCACC
AGGTATTGAAACCACAACGGGTCCATTAGGTCAAGGCATTACTAACGCTGTAGGCATGGCGATTGCAGAAAAAACGTTAG
CCGCACAATTTAATCGAGCAGGTCATGACATTGTTGATCATCATACTTACGTTTTTCTAGGGGATGGTTGCTTAATGGAG
GGTATTTCTCATGAGGCTTGTTCATTAGCCGGCACGTTAGGTCTAGGTAAATTGATTGCTTTTTATGATGATAATAATAT
TTCCATTGACGGTCATGTAGATGGTTGGTTCACTGATGATACACAAAAACGCTTTGAGGCTTACGGCTGGCATGTTATTC
CTGCTGTTGATGGACATAATGCAGAACAAATTATTGAAGCAATAAAACAAGCTCAGGCTGAGAAAAATAAACCAACTTTA
ATTATGTGTAAGACGATTATTGGCTATGGTTCTCCAAATAAGCAAAATACTCATGATAGCCATGGGGCACCATTAGGTGA
TGAAGAAATCGCTTTAACTCGTCAAGCATTAAATTGGAATTACGCACCTTTTGAAATTCCTGCTGATATTTATGCAAAAT
GGAATGCTCACGAAAAAGGACAAGTGGCGGAAAACGCATGGAATGAAAAATTTGCCGCTTATGAGAAAGCTTATCCTGAA
TTAGCAGTTGAATTTAAACGCCGTTTAAATGGGGAATTACCGGCAAACTGGGCAACAGAAAGCCAAGCCTTTATTGAAAA
ATTACAAGCAAATCCAGCCAATATTGCAAGTCGCAAAGCGTCACAAAATGCGATTGAAGCGTATGCAAAATTATTACCGG
AATTTTTAGGCGGGTCAGCTGATTTAGCGGGGTCAAACTTAACGTTATGGTCTGGTTCAAAACCCATTCGTGCGACAGAA
AATATAGATGGTAACTATATTAATTATGGCGTGCGTGAATTCGGAATGTCTGCCATCATGAATGGTATTGCATTGCACGG
CGGATTTATTCCTTATGGTGCAACGTTCTTAATGTTTATGGAATATGCACATAATGCAGTGCGTATGGCAGCCTTGATGA
AACAGCGTTCATTATTTGTTTATACACATGACTCTATCGGTTTAGGAGAAGACGGCCCGACGCATCAACCTGTTGAGCAA
ACAACCGCACTTCGCTTAATTCCAAATTTAGAAACATGGCGTCCTTGCGACCAAGTGGAATCTGCAATCGCATGGAAAGC
AGCGGTTGAACGTCAAGACGGTCCAAGTGCATTAATTTTCACTCGACAAAATCTTGCTCAAATGAACCGCACTTCTGAGC
AATTGGAAAACGTGAAACGTGGCGGTTATATCTTGCGTGCATGCTGTGAAAAAGGTGATTGTCCAGATTTAATCTTGATC
GCCACCGGTTCTGAAGTGGAATTAGCGATGAAAGCAGCGGAAGCGTTAGATGCGGAAGGCGTGAAAGTCCGTGTGGTATC
AATGCCGAGTACGAATGTATTTGATAAACAAGATGCTGCGTATCGTGAGGCAGTATTACCAAGTGCGGTAACTAAACGAG
TTGCAATTGAAGCGGGTATTTCAGATTTTTGGTACAAATATGTTGGCTTTGAAGGTCGCATTGTAGGCATGAATAGCTTT
GGTGAATCAGCACCGGCAGATCAACTGTTTAAACTCTTTGGCTTCACTGTTGAAAATATTGTGGCAAAGGCAAAAGAGAT
TTTATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(355-526)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, C-terminal domain (Transketolase_C)

(555-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.343

99.401

0.481

Multiple sequence alignment