Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FWK47_RS09630 Genome accession   NZ_CP042986
Coordinates   2106618..2108492 (+) Length   624 a.a.
NCBI ID   WP_075294273.1    Uniprot ID   A0A9Q7E587
Organism   Histophilus somni strain UOC-KLM-ATR-07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2101618..2113492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK47_RS09600 (FWK47_09600) sxy/tfoX 2101825..2102475 (+) 651 WP_012340956.1 TfoX/Sxy family DNA transformation protein Regulator
  FWK47_RS09605 (FWK47_09605) - 2102915..2103004 (-) 90 WP_075294269.1 methionine/alanine import family NSS transporter small subunit -
  FWK47_RS09610 (FWK47_09610) - 2103007..2104515 (-) 1509 WP_011609857.1 sodium-dependent transporter -
  FWK47_RS09615 (FWK47_09615) lysA 2104779..2106032 (-) 1254 WP_075294270.1 diaminopimelate decarboxylase -
  FWK47_RS09620 (FWK47_09620) - 2106054..2106185 (-) 132 WP_075294271.1 lipoprotein -
  FWK47_RS09625 (FWK47_09625) cyaY 2106310..2106618 (+) 309 WP_075294272.1 iron donor protein CyaY -
  FWK47_RS09630 (FWK47_09630) recQ 2106618..2108492 (+) 1875 WP_075294273.1 DNA helicase RecQ Machinery gene
  FWK47_RS09635 (FWK47_09635) - 2108573..2108800 (-) 228 WP_232451450.1 hypothetical protein -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 71048.89 Da        Isoelectric Point: 9.0883

>NTDB_id=333554 FWK47_RS09630 WP_075294273.1 2106618..2108492(+) (recQ) [Histophilus somni strain UOC-KLM-ATR-07]
MSVEEWKQQKSAVDFSQDSVEKSTALDILHSVFGYQSFRKGQLEVIEATLAKKDSLVIMATGGGKSLCYQIPALCFSGLT
LVISPLISLMKDQVDQLLANGINADYLNSSQTFEQQQLVQNKAMSGKLKLLYISPEKALTTSFFHFISHCKVSFIAVDET
HCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADQATRQDILIHLKLSNPHIYIGSFDRPNIRYSLVEKFKPMEQLS
QFIAKQKGKSGIIYCNSRNKVERIAESLRQKGISAEAYHAGMSNEQREFVQRAFQHDNVQIVVATIAFGMGINKSNVRFV
AHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYEPADYAWLQKVLLEKPDIPQRQIELHKLQSIGEFAESQICRRLVLLNY
FGEYQQKPCNNCDICLDPPKKYDGLVDAQKVMSAIYRVGQRFGAMYIIAVLRGSQNQKIKEYQHDKLSVFGIGKDRSREY
WQSVIRQLIHLGLIKQVIDHFNITLQLTLDSLPILRGEQPLQLATPRISSITNAVTIPKRAVTNYDKDLFARLRFLRKKI
ADKENIPPYIVFNDATLQEMAQYQPITEQEMIQINGVGDIKLKRFAQPFLALIKEHQFFRTTKK

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=333554 FWK47_RS09630 WP_075294273.1 2106618..2108492(+) (recQ) [Histophilus somni strain UOC-KLM-ATR-07]
ATGTCAGTTGAAGAATGGAAGCAACAAAAAAGTGCGGTAGATTTTAGCCAAGATTCTGTGGAAAAATCTACCGCACTTGA
TATTTTACATTCTGTTTTTGGGTATCAGTCCTTCCGTAAAGGACAACTGGAAGTTATCGAAGCAACTTTAGCTAAAAAGG
ACAGTTTAGTTATTATGGCAACAGGTGGCGGAAAGTCCTTATGCTATCAAATTCCCGCTCTTTGTTTCTCCGGTTTAACT
TTAGTGATTTCTCCTCTAATTTCATTAATGAAAGACCAAGTAGATCAGTTATTAGCAAATGGTATAAATGCTGATTATTT
AAATTCCAGTCAAACATTTGAACAACAACAGTTGGTTCAAAATAAAGCAATGTCAGGAAAATTAAAGTTGCTTTATATAT
CTCCAGAAAAAGCCTTAACAACCAGCTTTTTTCATTTTATTTCTCATTGCAAAGTCAGTTTTATTGCCGTTGATGAAACC
CATTGTATTTCACAGTGGGGACACGATTTTCGCCCAGAATATACTCAATTAGGAGGATTGAAAGCAAGTTTTCCTGATGC
ACCAATAATGGCACTAACCGCAACAGCAGATCAGGCAACCCGACAAGATATCCTTATTCATCTTAAATTATCTAATCCCC
ATATTTATATCGGTAGTTTTGATCGTCCAAATATTCGTTACTCCTTAGTTGAAAAATTTAAACCTATGGAGCAACTTTCT
CAATTTATCGCAAAACAAAAAGGGAAAAGTGGAATTATTTATTGTAACAGTCGTAATAAGGTTGAACGAATTGCAGAAAG
TCTACGCCAAAAAGGAATATCAGCTGAAGCTTATCATGCTGGTATGAGTAATGAGCAACGAGAATTTGTTCAACGTGCTT
TTCAACATGATAATGTACAAATTGTTGTTGCAACAATTGCTTTTGGAATGGGAATTAATAAATCTAACGTGCGTTTCGTC
GCTCATTTTGATCTACCTCGAAGTATCGAGGCATACTATCAGGAAACAGGACGAGCGGGGCGAGATGATTTACCAGCTGA
AGCTGTCTTATTTTACGAACCTGCAGATTACGCTTGGTTACAAAAAGTACTTTTAGAAAAACCAGATATACCGCAACGTC
AAATAGAACTACATAAATTACAATCCATAGGGGAATTTGCTGAAAGCCAAATTTGTCGGCGTTTAGTTCTATTAAATTAC
TTTGGTGAATATCAACAAAAACCTTGTAATAACTGTGATATTTGTTTAGATCCTCCGAAAAAATATGATGGATTGGTTGA
TGCACAAAAAGTGATGTCAGCAATCTATCGAGTGGGGCAACGTTTCGGGGCAATGTATATTATTGCTGTACTGCGTGGTT
CCCAAAATCAAAAAATTAAAGAATATCAACATGATAAACTAAGCGTTTTCGGCATTGGTAAAGATCGTAGTAGAGAATAT
TGGCAATCAGTTATTCGACAATTAATCCATTTAGGTCTGATAAAACAAGTAATTGACCATTTTAATATAACATTACAACT
CACATTAGATTCATTGCCTATTTTACGAGGTGAACAACCATTGCAATTAGCAACACCAAGGATATCTTCTATTACTAATG
CCGTTACTATACCAAAAAGAGCGGTCACAAATTACGATAAAGATCTCTTTGCTCGATTACGTTTTTTGCGTAAAAAAATA
GCAGACAAAGAAAATATTCCTCCTTATATAGTATTTAACGATGCAACATTACAAGAAATGGCACAATACCAACCAATAAC
AGAACAAGAAATGATACAAATTAATGGTGTCGGCGATATTAAATTAAAACGTTTTGCTCAACCCTTTCTTGCGTTAATTA
AAGAACATCAATTTTTTAGAACAACAAAAAAATAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(41-198)

RQC domain (RQC)

(418-527)

RecQ zinc-binding (RecQ_Zn_bind)

(358-416)

Helicase conserved C-terminal domain (Helicase_C)

(237-341)

HRDC domain (HRDC)

(547-613)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q7E587

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.328

95.353

0.375

Multiple sequence alignment