Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FWK47_RS06060 Genome accession   NZ_CP042986
Coordinates   1386659..1387165 (+) Length   168 a.a.
NCBI ID   WP_012340791.1    Uniprot ID   B0UVD9
Organism   Histophilus somni strain UOC-KLM-ATR-07     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381659..1392165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK47_RS06050 (FWK47_06050) pyrG 1382517..1384145 (-) 1629 WP_075294488.1 glutamine hydrolyzing CTP synthase -
  FWK47_RS06055 (FWK47_06055) recP/tkt 1384372..1386378 (-) 2007 WP_075294487.1 transketolase Machinery gene
  FWK47_RS06060 (FWK47_06060) luxS 1386659..1387165 (+) 507 WP_012340791.1 S-ribosylhomocysteine lyase Regulator
  FWK47_RS06065 (FWK47_06065) purT 1387206..1388387 (+) 1182 WP_075294519.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FWK47_RS06070 (FWK47_06070) hemB 1388444..1389466 (-) 1023 WP_075294486.1 porphobilinogen synthase -
  FWK47_RS06075 (FWK47_06075) tatC 1389532..1390269 (-) 738 WP_011608704.1 twin-arginine translocase subunit TatC -
  FWK47_RS06080 (FWK47_06080) tatB 1390266..1390820 (-) 555 WP_075294485.1 Sec-independent protein translocase protein TatB -
  FWK47_RS06085 (FWK47_06085) tatA 1390824..1391045 (-) 222 WP_075294484.1 Sec-independent protein translocase subunit TatA -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18981.63 Da        Isoelectric Point: 5.2186

>NTDB_id=333527 FWK47_RS06060 WP_012340791.1 1386659..1387165(+) (luxS) [Histophilus somni strain UOC-KLM-ATR-07]
MPLLDSFKVDHTRMNAPAVRVAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNSEQIEIIDISP
MGCRTGFYMSLIGMPNEQQVANAWSASMQDILNVKNQAEIPELNEYQCGTYTEHSLEDAHNIARNILNRGVGINKNEDLL
LDDNLLNS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=333527 FWK47_RS06060 WP_012340791.1 1386659..1387165(+) (luxS) [Histophilus somni strain UOC-KLM-ATR-07]
ATGCCACTACTTGACAGTTTTAAAGTTGATCATACGAGAATGAATGCCCCTGCTGTGCGTGTTGCAAAAACAATGCGAAC
ACCAAAAGGCGACAATATCACTGTTTTTGATCTTCGTTTTTGTATTCCTAATAAAGAAATCCTCTCTCCTAAAGGCATTC
ACACTTTAGAACACTTATTCGCAGGATTTATGCGTGATCATTTAAATAGTGAACAAATTGAAATTATTGATATTTCGCCC
ATGGGCTGTCGAACCGGATTTTATATGTCATTAATTGGCATGCCGAATGAACAACAAGTTGCAAACGCTTGGTCAGCTTC
AATGCAAGATATTTTAAACGTCAAAAATCAAGCCGAAATTCCTGAACTAAACGAATATCAATGTGGAACCTATACTGAAC
ATTCATTGGAAGATGCACATAATATTGCACGGAATATTCTTAATCGAGGCGTAGGTATTAATAAAAATGAAGATCTACTT
TTAGATGATAATTTACTCAATTCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UVD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.455

99.405

0.72