Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   FWK47_RS06055 Genome accession   NZ_CP042986
Coordinates   1384372..1386378 (-) Length   668 a.a.
NCBI ID   WP_075294487.1    Uniprot ID   A0A9Q6Z233
Organism   Histophilus somni strain UOC-KLM-ATR-07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1379372..1391378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK47_RS06035 (FWK47_06035) - 1379827..1380288 (-) 462 WP_232451736.1 restriction endonuclease subunit S -
  FWK47_RS06040 (FWK47_06040) pyrG 1380421..1380592 (-) 172 Protein_1165 CTP synthetase -
  FWK47_RS06045 (FWK47_06045) - 1380633..1382469 (+) 1837 Protein_1166 acyltransferase family protein -
  FWK47_RS06050 (FWK47_06050) pyrG 1382517..1384145 (-) 1629 WP_075294488.1 glutamine hydrolyzing CTP synthase -
  FWK47_RS06055 (FWK47_06055) recP/tkt 1384372..1386378 (-) 2007 WP_075294487.1 transketolase Machinery gene
  FWK47_RS06060 (FWK47_06060) luxS 1386659..1387165 (+) 507 WP_012340791.1 S-ribosylhomocysteine lyase Regulator
  FWK47_RS06065 (FWK47_06065) purT 1387206..1388387 (+) 1182 WP_075294519.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FWK47_RS06070 (FWK47_06070) hemB 1388444..1389466 (-) 1023 WP_075294486.1 porphobilinogen synthase -
  FWK47_RS06075 (FWK47_06075) tatC 1389532..1390269 (-) 738 WP_011608704.1 twin-arginine translocase subunit TatC -
  FWK47_RS06080 (FWK47_06080) tatB 1390266..1390820 (-) 555 WP_075294485.1 Sec-independent protein translocase protein TatB -
  FWK47_RS06085 (FWK47_06085) tatA 1390824..1391045 (-) 222 WP_075294484.1 Sec-independent protein translocase subunit TatA -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 73412.18 Da        Isoelectric Point: 5.9961

>NTDB_id=333526 FWK47_RS06055 WP_075294487.1 1384372..1386378(-) (recP/tkt) [Histophilus somni strain UOC-KLM-ATR-07]
MVTRRELANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPTNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMAIAEKTLAAQFNRAGHDIVDHHTYVFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTQKRFEAYGWHVIPAVDGHNAEQIIEAIKQAQAEKNKPTL
IMCKTIIGYGSPNKQNTHDSHGAPLGDEEIALTRQALNWNYAPFEIPADIYAKWNAHEKGQVAENAWNEKFAAYEKAYPE
LAVEFKRRLNGELPANWATESQAFIEKLQANPANIASRKASQNAIEAYAKLLPEFLGGSADLAGSNLTLWSGSKPIRATE
NIDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFMEYAHNAVRMAALMKQRSLFVYTHDSIGLGEDGPTHQPVEQ
TTALRLIPNLETWRPCDQVESAIAWKAAVERQDGPSALIFTRQNLAQMNRTSEQLENVKRGGYILRACCEKGDCPDLILI
ATGSEVELAMKAAEALDAEGVKVRVVSMPSTNVFDKQDVAYREAVLPSAVTKRVAIEAGISDFWYKYVGTNGRIVGMNSF
GESAPAAQLFKLFGFTVENIVAKAKEIL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=333526 FWK47_RS06055 WP_075294487.1 1384372..1386378(-) (recP/tkt) [Histophilus somni strain UOC-KLM-ATR-07]
ATGGTAACTCGTAGGGAATTGGCAAATGCAATCCGTTTTTTAAGTATGGATGCGGTACAAAAAGCAAAATCTGGGCATCC
GGGAGCTCCGATGGGAATGGCGGATATTGCGGAAGTATTATGGCGTGATTTTTTAAATCATAATCCGACTAATCCTCAAT
GGGCAAATCGTGATCGTTTTGTGTTATCTAACGGTCATGGCTCAATGTTAATTTATAGTTTACTGCATCTCACCGGTTAC
GATCTTTCTATCGAAGATTTAAAACAATTTCGTCAATTACATTCCAAGACTCCGGGGCACCCTGAATACGGTTATGCTCC
GGGTATTGAAACCACAACGGGTCCATTAGGTCAAGGCATTACTAACGCTGTAGGCATGGCGATTGCAGAAAAAACGTTAG
CTGCACAATTTAATCGAGCAGGTCATGACATTGTTGATCATCATACTTACGTTTTTCTAGGGGATGGTTGCTTAATGGAG
GGTATTTCTCATGAGGCTTGTTCATTAGCCGGCACGTTAGGTCTAGGTAAATTGATTGCTTTTTATGATGATAATAATAT
TTCCATTGACGGTCATGTAGATGGTTGGTTCACTGATGATACACAAAAACGCTTTGAGGCTTACGGCTGGCATGTTATTC
CTGCTGTTGATGGACATAATGCAGAACAAATTATTGAAGCAATAAAACAAGCTCAGGCTGAGAAAAATAAACCAACTTTA
ATTATGTGTAAGACGATTATTGGCTATGGTTCTCCAAATAAGCAAAATACTCATGATAGCCATGGGGCACCATTAGGTGA
TGAAGAAATCGCTTTAACTCGTCAAGCATTAAATTGGAATTACGCACCTTTTGAAATTCCTGCTGATATTTATGCAAAAT
GGAATGCTCACGAAAAAGGACAAGTGGCGGAAAACGCATGGAATGAAAAATTTGCCGCTTATGAGAAAGCTTATCCTGAA
TTAGCGGTTGAATTTAAACGCCGTTTAAATGGGGAATTACCGGCAAACTGGGCAACAGAAAGCCAAGCCTTTATTGAAAA
ATTACAAGCAAATCCAGCCAATATTGCAAGTCGCAAAGCGTCACAAAATGCGATTGAAGCGTATGCAAAATTATTACCGG
AATTTTTAGGCGGGTCAGCTGATTTAGCGGGGTCAAACTTAACGTTATGGTCTGGTTCAAAACCCATTCGTGCGACAGAA
AATATAGATGGTAACTATATTAATTATGGCGTGCGTGAATTCGGAATGTCTGCCATTATGAACGGTATTGCATTACACGG
CGGATTTATTCCTTACGGTGCAACGTTCTTAATGTTTATGGAATATGCACATAATGCAGTGCGTATGGCAGCCTTGATGA
AACAACGTTCATTATTTGTTTATACACATGACTCTATCGGTTTAGGAGAAGACGGTCCGACGCATCAACCAGTTGAGCAA
ACAACCGCACTTCGCTTAATTCCAAATTTAGAAACATGGCGACCTTGCGACCAAGTGGAATCTGCAATCGCATGGAAAGC
GGCGGTTGAACGTCAAGACGGTCCAAGTGCATTAATTTTCACTCGACAAAATCTTGCTCAAATGAACCGCACTTCTGAGC
AATTGGAAAACGTGAAACGTGGCGGTTATATCTTGCGTGCATGCTGTGAAAAAGGTGATTGCCCGGATTTAATCTTGATC
GCCACAGGTTCTGAAGTGGAATTAGCGATGAAAGCAGCGGAAGCGTTAGATGCGGAAGGCGTGAAAGTCCGTGTGGTATC
AATGCCGAGTACGAATGTATTTGATAAACAAGATGTTGCGTACCGTGAGGCAGTATTACCAAGTGCGGTGACTAAACGTG
TTGCAATTGAAGCGGGTATTTCAGATTTCTGGTACAAATATGTTGGTACTAACGGACGTATCGTTGGTATGAATAGCTTC
GGTGAATCAGCACCGGCAGCTCAACTGTTTAAACTCTTTGGCTTCACTGTTGAAAATATTGTGGCAAAGGCAAAAGAGAT
TTTATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(355-526)

Transketolase, C-terminal domain (Transketolase_C)

(555-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6Z233

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.193

99.401

0.479