Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CA899_RS09400 Genome accession   NZ_CP042903
Coordinates   2005859..2006515 (+) Length   218 a.a.
NCBI ID   WP_000611336.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN061761     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000859..2011515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA899_RS09370 (CA899_009465) dcyD 2001738..2002724 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  CA899_RS09375 (CA899_009470) tcyL 2002739..2003407 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  CA899_RS09380 (CA899_009475) tcyN 2003404..2004156 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  CA899_RS09385 (CA899_009480) sdiA 2004386..2005108 (+) 723 WP_001152713.1 transcriptional regulator SdiA -
  CA899_RS09390 (CA899_009485) yecF 2005176..2005400 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  CA899_RS09395 (CA899_009490) yecU 2005387..2005563 (-) 177 WP_000590344.1 protein YecU -
  CA899_RS24430 (CA899_009495) - 2005601..2005717 (-) 117 Protein_1847 transcriptional regulator -
  CA899_RS09400 (CA899_009500) letA 2005859..2006515 (+) 657 WP_000611336.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  CA899_RS09405 (CA899_009505) uvrC 2006512..2008344 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  CA899_RS09410 (CA899_009510) pgsA 2008401..2008949 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CA899_RS09430 (CA899_009530) yecA 2009599..2010264 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23878.58 Da        Isoelectric Point: 6.6397

>NTDB_id=332969 CA899_RS09400 WP_000611336.1 2005859..2006515(+) (letA) [Escherichia coli strain CFSAN061761]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITNGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=332969 CA899_RS09400 WP_000611336.1 2005859..2006515(+) (letA) [Escherichia coli strain CFSAN061761]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAATGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486