Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SP70585_RS02840 Genome accession   NC_012468
Coordinates   529057..529788 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae 70585     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 524057..534788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP70585_RS02815 (SP70585_0574) - 525690..526094 (+) 405 WP_000343113.1 hypothetical protein -
  SP70585_RS02820 (SP70585_0575) dnaJ 526438..527574 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  SP70585_RS12180 (SP70585_0576) - 527881..528120 (-) 240 WP_001810235.1 hypothetical protein -
  SP70585_RS02830 (SP70585_0577) - 528282..528569 (-) 288 WP_000777760.1 hypothetical protein -
  SP70585_RS02835 (SP70585_0578) - 528579..528989 (-) 411 WP_001278301.1 HIT family protein -
  SP70585_RS02840 (SP70585_0579) pptA 529057..529788 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  SP70585_RS02845 (SP70585_0580) - 529785..530834 (+) 1050 WP_000653767.1 ABC transporter permease -
  SP70585_RS02850 (SP70585_0581) - 531002..531331 (-) 330 WP_000132572.1 hypothetical protein -
  SP70585_RS02855 (SP70585_0582) - 531607..531945 (+) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  SP70585_RS02860 (SP70585_0583) comE/blpR 531950..532687 (+) 738 WP_001219147.1 response regulator transcription factor Regulator
  SP70585_RS02865 (SP70585_0584) - 532701..534041 (+) 1341 WP_001017622.1 sensor histidine kinase -
  SP70585_RS02870 (SP70585_0585) blpC 534083..534238 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=33293 SP70585_RS02840 WP_000889919.1 529057..529788(+) (pptA) [Streptococcus pneumoniae 70585]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=33293 SP70585_RS02840 WP_000889919.1 529057..529788(+) (pptA) [Streptococcus pneumoniae 70585]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment