Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ELZ14_RS26690 | Genome accession | NZ_CP034725 |
| Coordinates | 5769128..5769997 (+) | Length | 289 a.a. |
| NCBI ID | WP_003205672.1 | Uniprot ID | A0AAD1GUZ5 |
| Organism | Pseudomonas brassicacearum strain 3Re2-7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5764128..5774997
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELZ14_RS26665 (ELZ14_26660) | - | 5764331..5764627 (+) | 297 | WP_003205663.1 | DUF2845 domain-containing protein | - |
| ELZ14_RS26670 (ELZ14_26665) | - | 5764956..5765309 (-) | 354 | WP_003205664.1 | BON domain-containing protein | - |
| ELZ14_RS26675 (ELZ14_26670) | - | 5765574..5765981 (-) | 408 | WP_003205666.1 | pilin | - |
| ELZ14_RS26680 (ELZ14_26675) | pilB | 5766206..5767906 (+) | 1701 | WP_003205669.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ELZ14_RS26685 (ELZ14_26680) | pilC | 5767909..5769126 (+) | 1218 | WP_003205670.1 | type II secretion system F family protein | Machinery gene |
| ELZ14_RS26690 (ELZ14_26685) | pilD | 5769128..5769997 (+) | 870 | WP_003205672.1 | prepilin peptidase | Machinery gene |
| ELZ14_RS26695 (ELZ14_26690) | coaE | 5769997..5770620 (+) | 624 | WP_003205673.1 | dephospho-CoA kinase | - |
| ELZ14_RS26700 (ELZ14_26695) | yacG | 5770617..5770823 (+) | 207 | WP_003205675.1 | DNA gyrase inhibitor YacG | - |
| ELZ14_RS26705 (ELZ14_26700) | - | 5770820..5771035 (-) | 216 | WP_013694234.1 | hypothetical protein | - |
| ELZ14_RS26710 (ELZ14_26705) | - | 5771099..5771785 (-) | 687 | WP_003205678.1 | energy-coupling factor ABC transporter permease | - |
| ELZ14_RS26715 (ELZ14_26710) | - | 5771827..5772237 (-) | 411 | WP_003205679.1 | tautomerase family protein | - |
| ELZ14_RS26720 (ELZ14_26715) | - | 5772390..5773283 (+) | 894 | WP_003205681.1 | LysR substrate-binding domain-containing protein | - |
| ELZ14_RS26725 (ELZ14_26720) | - | 5773829..5774455 (+) | 627 | WP_003205682.1 | DUF1780 domain-containing protein | - |
| ELZ14_RS26730 (ELZ14_26725) | - | 5774452..5774979 (+) | 528 | WP_003205684.1 | MOSC domain-containing protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31941.12 Da Isoelectric Point: 8.0578
>NTDB_id=332772 ELZ14_RS26690 WP_003205672.1 5769128..5769997(+) (pilD) [Pseudomonas brassicacearum strain 3Re2-7]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
PWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
PWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=332772 ELZ14_RS26690 WP_003205672.1 5769128..5769997(+) (pilD) [Pseudomonas brassicacearum strain 3Re2-7]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGGTGGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGGTGGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.817 |
98.27 |
0.519 |
| pilD | Vibrio campbellii strain DS40M4 |
51.228 |
98.616 |
0.505 |
| pilD | Acinetobacter baumannii D1279779 |
48.754 |
97.232 |
0.474 |
| pilD | Acinetobacter nosocomialis M2 |
48.754 |
97.232 |
0.474 |
| pilD | Neisseria gonorrhoeae MS11 |
47.038 |
99.308 |
0.467 |