Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ELR50_RS08090 Genome accession   NZ_CP034688
Coordinates   1884289..1886496 (-) Length   735 a.a.
NCBI ID   WP_269964232.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain WXP-4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1879289..1891496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELR50_RS08055 (ELR50_08010) murB 1879652..1880671 (-) 1020 WP_269963668.1 UDP-N-acetylmuramate dehydrogenase -
  ELR50_RS08060 (ELR50_08015) - 1880668..1881129 (-) 462 WP_043316169.1 low molecular weight protein-tyrosine-phosphatase -
  ELR50_RS08065 (ELR50_08020) kdsB 1881129..1881893 (-) 765 WP_058488932.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ELR50_RS08070 (ELR50_08025) - 1881914..1882099 (-) 186 WP_009621404.1 Trm112 family protein -
  ELR50_RS08075 (ELR50_08030) lpxK 1882140..1883138 (-) 999 WP_269963669.1 tetraacyldisaccharide 4'-kinase -
  ELR50_RS08080 (ELR50_08035) - 1883138..1883584 (-) 447 WP_009621400.1 ExbD/TolR family protein -
  ELR50_RS08085 (ELR50_08040) exbB 1883581..1884216 (-) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ELR50_RS08090 (ELR50_08045) comA 1884289..1886496 (-) 2208 WP_269964232.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ELR50_RS08095 (ELR50_08050) - 1886633..1887163 (+) 531 WP_061561111.1 DUF2062 domain-containing protein -
  ELR50_RS08100 (ELR50_08055) - 1887821..1889071 (-) 1251 WP_009621392.1 lipoprotein-releasing ABC transporter permease subunit -
  ELR50_RS08105 (ELR50_08060) lolD 1889088..1889771 (-) 684 WP_009621390.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ELR50_RS08110 (ELR50_08065) - 1889764..1891017 (-) 1254 WP_064582522.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 78601.89 Da        Isoelectric Point: 8.3611

>NTDB_id=332535 ELR50_RS08090 WP_269964232.1 1884289..1886496(-) (comA) [Pseudomonas citronellolis strain WXP-4]
MMALACGLVLLRFLPQLPPLAALLPLVGMALLCLYRRHHAVALFLLGFAWACLFAHDSWEGRLAPKLDGRTLWLEGQVAG
LPATADGIVRFELEDVQARLDLPGRIRVSWYGGPEVRAGERWRLAVTLRRPHGLANDFGFDYEAWLAADGIGATGSVKDG
RRLAEATGPMAWREAWKDRLLAVDARGRNAYLVALVLGDGSGLGRDDWDMLQDTGTLHLMVISGSHISLLGGLLYALVAG
LARLGAWPARVPWLPCACAVALAGAWGYGWIAGLQVPALRACLMLSMVLLWRLHFRRQGVWLPLLGALLVVLLVDPLVSL
TPGFWLSFAAVALLVYGFAGRLGRGAGWLAWGRAQWLMALGLAPVLLALGLPLSPAGALANLIAVPCVELLVVPLALVGS
LLLWLPVVGEGLLWLAGGVLDVLLGLLGRLSAYSPAWHPMAPPPWSIALALFGALLCLAPAGLPLRPLGLALLLPMFWPH
STTPPHGHAEVRVLDVGQGLSVLIRTRQHTWLYDAGPRRGDFDLGEVAVLPTLRGLGIERLDMLLLSHADNDHAGGARSV
AAAVPVARIISGEPGRLPDSLPAGPCGNEAWQLDGVRFSTWQWPDATDSNGRSCVLYVEAGGESLLLTGDLPAAGEAAWL
ASHPGLGADWLLAGHHGSRSASSAAFVRQLAPRAALVSRSRHNAHGHPSSEVLQRFAEQGTKVHDVAREGALRLLLGQRG
TLRGVRENAGFWREK

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=332535 ELR50_RS08090 WP_269964232.1 1884289..1886496(-) (comA) [Pseudomonas citronellolis strain WXP-4]
ATGATGGCGCTGGCCTGCGGCCTGGTGCTGCTGCGTTTCCTGCCCCAGCTGCCACCCTTGGCGGCCCTGCTGCCATTGGT
CGGAATGGCGCTGCTGTGCCTGTATCGGCGACATCACGCGGTGGCGCTCTTCCTGCTCGGCTTCGCCTGGGCCTGCCTGT
TCGCCCATGACTCGTGGGAAGGGCGCCTGGCTCCCAAACTGGACGGGCGGACGCTGTGGCTGGAAGGGCAGGTTGCCGGC
CTGCCGGCTACCGCGGATGGCATCGTCCGCTTCGAGCTGGAGGACGTCCAGGCGCGCCTGGACCTGCCCGGGCGCATCCG
CGTGTCCTGGTATGGCGGCCCGGAGGTGCGGGCCGGGGAGCGCTGGCGCCTGGCGGTCACCCTGCGTCGCCCCCATGGCC
TGGCCAACGACTTCGGTTTCGACTATGAAGCCTGGCTGGCGGCCGACGGCATAGGCGCCACCGGCAGCGTCAAGGATGGC
CGGCGCCTGGCCGAGGCCACGGGACCGATGGCTTGGCGCGAAGCCTGGAAGGACCGGCTGCTGGCGGTGGATGCCCGGGG
ACGCAACGCCTACCTGGTGGCCCTGGTCCTAGGCGACGGCAGCGGCCTGGGCCGGGACGACTGGGACATGCTGCAGGACA
CCGGCACCCTGCACCTGATGGTGATCTCCGGCTCGCACATCTCCCTGCTGGGCGGCTTGCTCTACGCCCTGGTGGCGGGT
TTGGCGCGCCTGGGAGCCTGGCCCGCGCGCGTGCCCTGGCTGCCCTGCGCCTGTGCCGTTGCACTGGCTGGCGCCTGGGG
CTATGGCTGGATCGCCGGGCTGCAGGTGCCGGCATTGCGCGCCTGCCTGATGCTCAGCATGGTGTTGCTGTGGCGCCTGC
ACTTTCGTCGCCAGGGCGTCTGGCTGCCGCTGCTCGGCGCTCTGCTGGTGGTGCTGCTGGTCGATCCATTGGTCAGCCTG
ACGCCCGGCTTCTGGCTGTCCTTCGCCGCCGTGGCGCTGCTCGTCTACGGCTTCGCCGGGCGCCTGGGGCGGGGGGCCGG
CTGGCTGGCCTGGGGGCGTGCGCAGTGGCTCATGGCTCTCGGCCTGGCCCCGGTGTTGCTGGCCCTGGGCCTGCCGCTGA
GTCCCGCTGGCGCGCTGGCGAACCTGATCGCGGTGCCCTGTGTCGAGTTGTTGGTGGTGCCGCTGGCGCTGGTCGGCAGC
CTGCTGCTGTGGCTGCCGGTGGTGGGCGAGGGGCTGCTGTGGCTGGCGGGTGGCGTGCTCGATGTTCTGCTGGGCCTGCT
CGGGCGCCTGTCGGCGTACTCGCCGGCCTGGCACCCCATGGCGCCGCCGCCCTGGAGCATCGCCCTGGCCCTGTTCGGCG
CGCTGCTATGCCTGGCGCCGGCCGGGCTGCCGCTGCGCCCGCTGGGCCTGGCGTTGCTGTTGCCGATGTTCTGGCCGCAT
TCCACTACGCCGCCCCATGGCCATGCCGAAGTGCGGGTGCTGGACGTGGGCCAGGGGCTGTCCGTGCTGATCCGCACCCG
CCAGCACACCTGGCTGTACGACGCCGGACCGCGCCGGGGCGATTTCGACCTCGGCGAGGTGGCGGTGCTGCCGACTCTTC
GTGGCCTGGGCATCGAGCGCCTGGATATGCTGCTGCTCAGCCACGCCGACAATGACCACGCCGGCGGCGCCCGCTCGGTG
GCGGCGGCCGTGCCGGTAGCGCGGATCATCAGCGGCGAGCCCGGGCGTTTGCCGGACAGCCTGCCTGCCGGCCCCTGCGG
CAACGAGGCATGGCAGCTGGACGGCGTGCGCTTCTCCACCTGGCAGTGGCCCGATGCGACGGACAGCAACGGCCGCTCCT
GTGTGCTGTACGTCGAGGCCGGCGGCGAGAGCCTGCTGCTCACCGGCGACCTGCCGGCCGCAGGCGAGGCCGCCTGGCTG
GCCAGCCATCCAGGGCTTGGCGCCGACTGGCTGCTAGCCGGCCACCATGGCAGCCGCAGCGCCTCTTCCGCGGCCTTCGT
CAGGCAACTGGCGCCCCGCGCGGCGCTGGTTTCCCGCTCGCGGCACAACGCCCATGGCCATCCGTCCAGCGAGGTGCTGC
AACGCTTTGCCGAGCAGGGGACGAAGGTGCACGATGTGGCCCGGGAGGGCGCCCTGCGCCTGCTCCTGGGCCAGCGTGGA
ACGCTGCGCGGCGTGCGCGAAAATGCCGGATTCTGGAGGGAAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(195-458)

Metallo-beta-lactamase superfamily (Lactamase_B)

(495-677)

Domain of unknown function (DUF4131) (DUF4131)

(16-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.222

97.959

0.561

Multiple sequence alignment