Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ELR50_RS08085 Genome accession   NZ_CP034688
Coordinates   1883581..1884216 (-) Length   211 a.a.
NCBI ID   WP_009621398.1    Uniprot ID   A0A1A5CYN3
Organism   Pseudomonas citronellolis strain WXP-4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1878581..1889216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELR50_RS08055 (ELR50_08010) murB 1879652..1880671 (-) 1020 WP_269963668.1 UDP-N-acetylmuramate dehydrogenase -
  ELR50_RS08060 (ELR50_08015) - 1880668..1881129 (-) 462 WP_043316169.1 low molecular weight protein-tyrosine-phosphatase -
  ELR50_RS08065 (ELR50_08020) kdsB 1881129..1881893 (-) 765 WP_058488932.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ELR50_RS08070 (ELR50_08025) - 1881914..1882099 (-) 186 WP_009621404.1 Trm112 family protein -
  ELR50_RS08075 (ELR50_08030) lpxK 1882140..1883138 (-) 999 WP_269963669.1 tetraacyldisaccharide 4'-kinase -
  ELR50_RS08080 (ELR50_08035) - 1883138..1883584 (-) 447 WP_009621400.1 ExbD/TolR family protein -
  ELR50_RS08085 (ELR50_08040) exbB 1883581..1884216 (-) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ELR50_RS08090 (ELR50_08045) comA 1884289..1886496 (-) 2208 WP_269964232.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ELR50_RS08095 (ELR50_08050) - 1886633..1887163 (+) 531 WP_061561111.1 DUF2062 domain-containing protein -
  ELR50_RS08100 (ELR50_08055) - 1887821..1889071 (-) 1251 WP_009621392.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22919.12 Da        Isoelectric Point: 8.0527

>NTDB_id=332534 ELR50_RS08085 WP_009621398.1 1883581..1884216(-) (exbB) [Pseudomonas citronellolis strain WXP-4]
MWELVKAGGWMMLPIILSSIAATAIVAERLWTLRRSRIAPPQLLGQVWKQIKDKKLNSQALKELKASSPLGEVLAAGLVN
SKHGREIMKECIEEAAGRVIHEMERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPQLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=332534 ELR50_RS08085 WP_009621398.1 1883581..1884216(-) (exbB) [Pseudomonas citronellolis strain WXP-4]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCATCGCCCCGCCGCAGCTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGCTGAACAGCCAGGCGCTCAAGGAGCTCAAGGCGTCTTCCCCGCTGGGCGAGGTGCTCGCCGCCGGCCTGGTCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGGCCGGGTGATCCACGAGATGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCCCCGCAGCTCGCCGGCGGCATCTCCAAGGCCCTGGTGACCACCGCCTCC
GGCCTGATCGTGGCCATCCCGGCCGTGTTCTTCCACCGCTACCTGCTGCGCCGCGTCGATGAGCTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGCGACCGCGAGGTCGACCTCTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5CYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806

Multiple sequence alignment