Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EKQ63_RS22165 Genome accession   NZ_CP034686
Coordinates   3866682..3868421 (-) Length   579 a.a.
NCBI ID   WP_000947752.1    Uniprot ID   A0A3P1C6F5
Organism   Bacillus sp. BD59S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3861682..3873421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKQ63_RS22135 (EKQ63_22115) - 3862706..3862939 (+) 234 WP_001190188.1 DUF2627 domain-containing protein -
  EKQ63_RS22140 (EKQ63_22120) - 3862989..3863717 (-) 729 WP_143881495.1 glycerophosphodiester phosphodiesterase -
  EKQ63_RS22145 (EKQ63_22125) - 3863769..3863915 (+) 147 WP_001247671.1 YycC family protein -
  EKQ63_RS22150 (EKQ63_22130) spo0A 3864183..3864977 (-) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  EKQ63_RS22160 (EKQ63_22140) spoIVB 3865265..3866563 (-) 1299 WP_002028467.1 SpoIVB peptidase -
  EKQ63_RS22165 (EKQ63_22145) recN 3866682..3868421 (-) 1740 WP_000947752.1 DNA repair protein RecN Machinery gene
  EKQ63_RS22170 (EKQ63_22150) argR 3868689..3869138 (-) 450 WP_001032581.1 arginine repressor ArgR -
  EKQ63_RS22175 (EKQ63_22155) - 3869281..3870120 (-) 840 WP_143881496.1 TlyA family RNA methyltransferase -
  EKQ63_RS22180 (EKQ63_22160) dxs 3870124..3872016 (-) 1893 WP_000366448.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EKQ63_RS22185 (EKQ63_22165) ispA 3872320..3873210 (-) 891 WP_000150362.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65793.86 Da        Isoelectric Point: 4.8260

>NTDB_id=332498 EKQ63_RS22165 WP_000947752.1 3866682..3868421(-) (recN) [Bacillus sp. BD59S]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=332498 EKQ63_RS22165 WP_000947752.1 3866682..3868421(-) (recN) [Bacillus sp. BD59S]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGACTATTTTATGTGGAAGATGATAAGCATCCATGTATTGAAAAA
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATCCATGGGCAACACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTA
GATATATACCAAAACGTATATGCTGACTATGAGAAATTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGTTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAAGCGGATTTAAAGATGGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAGATTTATAAAGCATTAGGTGACGCGTATCGCTCGTTAAGTGCT
GATGGACAAGGGCTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCCAATAGTTATTATTTATTAGAAGAAGTTGCGTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGCTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAAGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCTGAAGAGCCTCTTGTGGAGGGAGCACCAGTAAGACTTACGGCGGATGGCTATGACCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCCGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAGCATCAAGGTGTTGCATCTGTAATTTTTGATGAGGTGGATACTGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCTCATTTATTTATTCGAAAACAAGTAGCAAATGATCGAACGATTACGTCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P1C6F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment