Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FVA71_RS06415 Genome accession   NZ_CP042878
Coordinates   1334075..1334590 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain NMBU_W05E18     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329075..1339590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVA71_RS06370 (FVA71_06590) csrA 1329890..1330075 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FVA71_RS06400 (FVA71_06620) yqaB 1331305..1331871 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FVA71_RS06405 (FVA71_06625) yqaA 1331868..1332296 (+) 429 WP_001287454.1 YqaA family protein -
  FVA71_RS06410 (FVA71_06630) gshA 1332369..1333925 (+) 1557 WP_001551535.1 glutamate--cysteine ligase -
  FVA71_RS06415 (FVA71_06635) luxS 1334075..1334590 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FVA71_RS06420 (FVA71_06640) emrB 1334654..1336192 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FVA71_RS06425 (FVA71_06645) emrA 1336209..1337381 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FVA71_RS06430 (FVA71_06650) emrR 1337508..1338038 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FVA71_RS06435 (FVA71_06655) ygaH 1338129..1338464 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  FVA71_RS06440 (FVA71_06660) ygaZ 1338454..1339191 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=332472 FVA71_RS06415 WP_001130211.1 1334075..1334590(+) (luxS) [Escherichia coli strain NMBU_W05E18]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=332472 FVA71_RS06415 WP_001130211.1 1334075..1334590(+) (luxS) [Escherichia coli strain NMBU_W05E18]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment