Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SPP_RS09335 Genome accession   NC_012467
Coordinates   1754500..1755426 (-) Length   308 a.a.
NCBI ID   WP_001291296.1    Uniprot ID   A0A0T8U5M2
Organism   Streptococcus pneumoniae P1031     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1749500..1760426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPP_RS09315 (SPP_1885) treR 1750623..1751333 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  SPP_RS09320 (SPP_1886) - 1751366..1752169 (-) 804 WP_000157674.1 ABC transporter ATP-binding protein -
  SPP_RS12850 (SPP_1887) - 1752182..1753059 (-) 878 Protein_1795 ABC transporter permease -
  SPP_RS09330 (SPP_1889) - 1753071..1753880 (-) 810 Protein_1796 ABC transporter substrate-binding protein -
  SPP_RS09335 (SPP_1892) amiF 1754500..1755426 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  SPP_RS09340 (SPP_1893) amiE 1755437..1756504 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  SPP_RS09345 (SPP_1894) amiD 1756513..1757439 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  SPP_RS09350 (SPP_1895) amiC 1757439..1758935 (-) 1497 WP_000759902.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34769.82 Da        Isoelectric Point: 6.6224

>NTDB_id=33245 SPP_RS09335 WP_001291296.1 1754500..1755426(-) (amiF) [Streptococcus pneumoniae P1031]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQSIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=33245 SPP_RS09335 WP_001291296.1 1754500..1755426(-) (amiF) [Streptococcus pneumoniae P1031]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAGTATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCTTGACCTATCTCTTCATCGCTCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCAGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T8U5M2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment