Detailed information NTG0332441

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ELE18_RS21465
• Genome accession: NZ_CP034678
• Coordinates: 4161694..4162494 (+)
• Length: 266 a.a.
• NCBI ID: WP_094334303.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain D120-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4156694..4167494

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ELE18_RS21430 (ELE18_21435)	gspH	4156847..4157362 (+)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-
ELE18_RS21435 (ELE18_21440)	gspI	4157359..4157724 (+)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
ELE18_RS21440 (ELE18_21445)	gspJ	4157721..4158317 (+)	597	WP_064189489.1	type II secretion system minor pseudopilin GspJ	-
ELE18_RS21445 (ELE18_21450)	gspK	4158314..4159294 (+)	981	WP_127113880.1	type II secretion system minor pseudopilin GspK	-
ELE18_RS21450 (ELE18_21455)	gspL	4159287..4160483 (+)	1197	WP_064178511.1	type II secretion system protein GspL	-
ELE18_RS21455 (ELE18_21460)	-	4160476..4160961 (+)	486	WP_043521988.1	type II secretion system protein M	-
ELE18_RS21460 (ELE18_21465)	-	4160951..4161679 (+)	729	WP_043521990.1	type II secretion system protein N	-
ELE18_RS21465 (ELE18_21470)	pilD	4161694..4162494 (+)	801	WP_094334303.1	A24 family peptidase	Machinery gene
ELE18_RS21470 (ELE18_21475)	hrpB	4162542..4164971 (-)	2430	WP_094334302.1	ATP-dependent helicase HrpB	-
ELE18_RS21475 (ELE18_21480)	thpR	4165044..4165580 (+)	537	WP_049116602.1	RNA 2',3'-cyclic phosphodiesterase	-
ELE18_RS21480 (ELE18_21485)	sfsA	4165580..4166296 (+)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
ELE18_RS21485 (ELE18_21490)	dksA	4166459..4166914 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29332.90 Da
• Isoelectric Point: 8.8894

>NTDB_id=332441 ELE18_RS21465 WP_094334303.1 4161694..4162494(+) (pilD) [Klebsiella quasipneumoniae strain D120-1]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLVASASGLTWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=332441 ELE18_RS21465 WP_094334303.1 4161694..4162494(+) (pilD) [Klebsiella quasipneumoniae strain D120-1]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTTATTTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCGCTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTTTTGGTCGCCTCGGCCAGCGGGCTGACGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425