Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   DYL72_RS12875 Genome accession   NZ_CP034672
Coordinates   2718903..2720309 (+) Length   468 a.a.
NCBI ID   WP_026028983.1    Uniprot ID   -
Organism   Vibrio anguillarum strain J360     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2713903..2725309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYL72_RS12855 (DYL72_12855) - 2714208..2714876 (-) 669 WP_019282887.1 SDR family oxidoreductase -
  DYL72_RS12860 (DYL72_12860) - 2714996..2715928 (+) 933 WP_019282888.1 LysR family transcriptional regulator -
  DYL72_RS12870 (DYL72_12870) uvrB 2716631..2718661 (+) 2031 WP_029189720.1 excinuclease ABC subunit UvrB -
  DYL72_RS12875 (DYL72_12875) luxO 2718903..2720309 (+) 1407 WP_026028983.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  DYL72_RS12880 (DYL72_12880) luxU 2720312..2720650 (+) 339 WP_013857261.1 quorum-sensing phosphorelay protein LuxU -
  DYL72_RS12885 (DYL72_12885) - 2720647..2721537 (-) 891 WP_013857260.1 YvcK family protein -
  DYL72_RS12890 (DYL72_12890) moaA 2721848..2722837 (+) 990 WP_026028246.1 GTP 3',8-cyclase MoaA -
  DYL72_RS12895 (DYL72_12895) moaB 2722905..2723417 (+) 513 WP_010320682.1 molybdenum cofactor biosynthesis protein B -
  DYL72_RS12900 (DYL72_12900) moaC 2723428..2723928 (+) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  DYL72_RS12905 (DYL72_12905) moaD 2723921..2724166 (+) 246 WP_010320680.1 molybdopterin synthase sulfur carrier subunit -
  DYL72_RS12910 (DYL72_12910) moaE 2724166..2724639 (+) 474 WP_019282889.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52158.56 Da        Isoelectric Point: 6.0312

>NTDB_id=332392 DYL72_RS12875 WP_026028983.1 2718903..2720309(+) (luxO) [Vibrio anguillarum strain J360]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTETRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=332392 DYL72_RS12875 WP_026028983.1 2718903..2720309(+) (luxO) [Vibrio anguillarum strain J360]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATCGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAATCAGAACTACCAAGGTTTTATCGGCAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTCCAGTAAAGCCAGTATTTTTATTACTGGCGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTAATAGAGA
GTGAACTCTTTGGCCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGT
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCTTGGAAAG
AAGTGCAAGAGGGGCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTGCTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGTAACGAGATCGAACTGAGCATGCTACCCCCACCGCTAAATCAAGTCGTGGATAACAAAATT
CGATTAGCAAACTTAACGACGGAAACACGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTGTGGATGACGGAAAA
ACAAGCTATCGAACAAGCGATAGAAGCGTGTGATGGCAATATTCCTAAAGCAGCCAGTTATTTGGACGTTAGCCCTTCAA
CTATCTACCGCAAGCTGCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.641

95.94

0.85
  pilR Pseudomonas aeruginosa PAK

38.178

98.504

0.376

Multiple sequence alignment