Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | DYL72_RS05815 | Genome accession | NZ_CP034672 |
| Coordinates | 1241835..1242437 (-) | Length | 200 a.a. |
| NCBI ID | WP_017047271.1 | Uniprot ID | A0AAW8GXZ8 |
| Organism | Vibrio anguillarum strain J360 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1236835..1247437
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DYL72_RS05790 (DYL72_05790) | aroB | 1237182..1238270 (-) | 1089 | WP_029388273.1 | 3-dehydroquinate synthase | - |
| DYL72_RS05795 (DYL72_05795) | aroK | 1238294..1238815 (-) | 522 | WP_010317691.1 | shikimate kinase AroK | - |
| DYL72_RS05800 (DYL72_05800) | pilQ | 1239002..1240687 (-) | 1686 | WP_370685857.1 | type IV pilus secretin PilQ | Machinery gene |
| DYL72_RS05805 (DYL72_05805) | pilP | 1240741..1241262 (-) | 522 | WP_013855888.1 | pilus assembly protein PilP | Machinery gene |
| DYL72_RS05810 (DYL72_05810) | pilO | 1241249..1241842 (-) | 594 | WP_013855887.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| DYL72_RS05815 (DYL72_05815) | pilN | 1241835..1242437 (-) | 603 | WP_017047271.1 | PilN domain-containing protein | Machinery gene |
| DYL72_RS05820 (DYL72_05820) | pilM | 1242427..1243437 (-) | 1011 | WP_019282438.1 | type IV pilus assembly protein PilM | Machinery gene |
| DYL72_RS05825 (DYL72_05825) | - | 1243587..1246085 (+) | 2499 | WP_019282439.1 | penicillin-binding protein 1A | - |
| DYL72_RS05830 (DYL72_05830) | oxyR | 1246122..1247012 (-) | 891 | WP_026027425.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 200 a.a. Molecular weight: 22717.24 Da Isoelectric Point: 9.6928
>NTDB_id=332367 DYL72_RS05815 WP_017047271.1 1241835..1242437(-) (pilN) [Vibrio anguillarum strain J360]
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQQQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQQQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD
Nucleotide
Download Length: 603 bp
>NTDB_id=332367 DYL72_RS05815 WP_017047271.1 1241835..1242437(-) (pilN) [Vibrio anguillarum strain J360]
ATGTTGCATAGTATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCGCAGCAGCAAGAGTCTC
GTCTGGCTTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCGCAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG
ATGTTGCATAGTATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCGCAGCAGCAAGAGTCTC
GTCTGGCTTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCGCAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
67.021 |
94 |
0.63 |
| pilN | Vibrio campbellii strain DS40M4 |
66.129 |
93 |
0.615 |