Detailed information NTG0332333

Bioinformatically predicted

Overview

• Name: comL
• Type: Machinery gene
• Locus tag: ELB75_RS07275
• Genome accession: NZ_CP034670
• Coordinates: 1440617..1441426 (-)
• Length: 269 a.a.
• NCBI ID: WP_126983355.1
• Uniprot ID: A0A3S9SK15
• Organism: Eikenella corrodens strain KCOM 3110
• Function: DNA processing; DNA transport into the cytoplasm (predicted from homology) DNA processing DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1439255..1440050	1440617..1441426	flank	567

Gene organization within MGE regions

Location: 1439255..1441426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ELB75_RS07265 (ELB75_07265)	-	1439255..1440050 (+)	796	WP_126982325.1	IS5 family transposase	-
ELB75_RS07270 (ELB75_07270)	-	1440097..1440531 (-)	435	WP_126983354.1	DUF4124 domain-containing protein	-
ELB75_RS07275 (ELB75_07275)	comL	1440617..1441426 (-)	810	WP_126983355.1	outer membrane protein assembly factor BamD	Machinery gene

Sequence

Protein

• Length: 269 a.a.
• Molecular weight: 31441.60 Da
• Isoelectric Point: 9.3174

>NTDB_id=332333 ELB75_RS07275 WP_126983355.1 1440617..1441426(-) (comL) [Eikenella corrodens strain KCOM 3110]
MKKILLVTGLAVMLSACSSTSTTAVSQDAQITQDWSVDKLYAEAHEEMESRNYSRSVRLYEILRARFPNTRQAVQSRLDT
AYVYYKDEQQPQALAHVEQFLKLYPNHPNTDYALYLKGLIVLNQDKSIFNKLASQDWSDRDPKANREAYQVFNELITRFP
DSKYANDAREKMTRLVDALGGNEMAIARYYMQRGAYLAAANRAQGIVSRYQNTRYMEEALAIMMTAYARLEKPELSNDTR
RVLARNFPQSPYLQKEWQPNDIPWWRYWK

Nucleotide

• Length: 810 bp

>NTDB_id=332333 ELB75_RS07275 WP_126983355.1 1440617..1441426(-) (comL) [Eikenella corrodens strain KCOM 3110]
ATGAAAAAGATTCTTTTAGTTACCGGCCTGGCAGTGATGCTGTCGGCCTGCTCCAGCACTTCAACCACCGCTGTGAGCCA
AGATGCCCAGATTACGCAGGATTGGTCGGTAGATAAGCTGTATGCCGAAGCGCACGAGGAAATGGAGAGCCGCAATTATA
GCCGTTCGGTGCGCTTATATGAAATTTTGCGGGCGCGTTTCCCCAACACCCGCCAAGCGGTGCAGTCGCGGCTGGATACG
GCTTATGTGTATTACAAAGACGAACAGCAGCCGCAGGCCTTGGCGCATGTGGAGCAGTTTTTGAAGCTGTATCCCAACCA
CCCGAATACCGATTATGCGCTGTATCTGAAGGGCTTGATTGTGCTCAATCAAGACAAATCCATCTTCAACAAGCTGGCCT
CGCAGGATTGGTCCGACCGCGACCCGAAAGCAAACCGCGAAGCCTATCAGGTGTTTAACGAGCTCATCACCCGCTTCCCC
GATAGCAAATACGCCAACGACGCGCGCGAGAAAATGACGCGCCTGGTGGATGCGCTGGGCGGCAACGAAATGGCCATCGC
CCGCTACTATATGCAGCGCGGCGCTTACTTGGCCGCCGCCAACCGTGCGCAGGGGATTGTGAGCCGCTATCAGAATACGC
GCTATATGGAAGAGGCGCTGGCGATTATGATGACCGCCTACGCCCGTTTGGAAAAACCGGAACTGAGCAACGACACCCGC
CGTGTGCTGGCGCGAAACTTCCCGCAAAGCCCCTATTTGCAGAAAGAATGGCAGCCAAATGATATTCCGTGGTGGCGCTA
TTGGAAGTAG

Domains

Predicted by InterproScan.

• Outer membrane lipoprotein (YfiO) (36-240)

• Prokaryotic membrane lipoprotein lipid attachment site (LPAM_1) (1-18)

3D structure

• AlphaFold DB: A0A3S9SK15

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comL	Neisseria gonorrhoeae MS11	65.299	99.628	0.651
comL	Neisseria meningitidis MC58	64.925	99.628	0.647