Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   ELB75_RS04960 Genome accession   NZ_CP034670
Coordinates   972093..973796 (+) Length   567 a.a.
NCBI ID   WP_126982976.1    Uniprot ID   A0A3S9SIV7
Organism   Eikenella corrodens strain KCOM 3110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 967093..978796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS12855 (ELB75_04925) - 967278..967718 (-) 441 WP_126982970.1 YhcH/YjgK/YiaL family protein -
  ELB75_RS04930 (ELB75_04930) - 967775..968149 (-) 375 WP_126982971.1 TIGR02328 family protein -
  ELB75_RS04935 (ELB75_04935) - 968215..968568 (-) 354 WP_126982972.1 hypothetical protein -
  ELB75_RS04940 (ELB75_04940) leuD 968640..969281 (-) 642 WP_126982973.1 3-isopropylmalate dehydratase small subunit -
  ELB75_RS04945 (ELB75_04945) - 969383..969571 (-) 189 WP_070633170.1 hypothetical protein -
  ELB75_RS04950 (ELB75_04950) - 969807..970193 (-) 387 WP_126982974.1 hypothetical protein -
  ELB75_RS04955 (ELB75_04955) leuC 970350..971759 (-) 1410 WP_126982975.1 3-isopropylmalate dehydratase large subunit -
  ELB75_RS04960 (ELB75_04960) recD 972093..973796 (+) 1704 WP_126982976.1 exodeoxyribonuclease V subunit alpha Machinery gene
  ELB75_RS04965 (ELB75_04965) - 974183..975343 (+) 1161 WP_126982977.1 beta-ketoacyl-ACP synthase III -
  ELB75_RS04970 (ELB75_04970) - 975421..975813 (+) 393 WP_126982978.1 hypothetical protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 61187.17 Da        Isoelectric Point: 8.4605

>NTDB_id=332325 ELB75_RS04960 WP_126982976.1 972093..973796(+) (recD) [Eikenella corrodens strain KCOM 3110]
MTEYRYPAAQAAAGVLQRLAPQAAEPVLPLLDELFAAQEGGHSYITLTPQEADALRQAAPVVGDGSAFTPLVLRGRRLFG
GRLFALERSVAAELRRVARGRVRLPENAGLRQRLCDWFPDAGHNGQRLAAALAVLQPLMLVTGGPGTGKTTTVAKLLALL
CADAAEMPRIALTAPTGKAAAHMTRSLHRALSGFKLGSEQVLQHLTALEGQTVHRLLKLNPVVGYSKFDREQPLPFDIVV
ADEASMLDLPLLHQLLCAIPERGRLILLGDENQLPPVGIGAVLPVLAQPTVLTAEEVAKLAEWLPEGVPFEVRDNPPPLA
GNVARLEYSHRFDPQRGVGALAQAVVNGEAAAAEAAFARFTDDLFRLPETPAALARHFAKQHEAYWQAVSSGDPAACFAA
QQQLVVLGARRSQAAEFNREYRKLLAAQGRASEQGWFAGQVLMVAENDYAVKVFNGDIGIVLPHGDGLAAFFPDAGGFRA
VSLSRLPAHDTAFAMTVHKSQGSEYQEVWLLGDEADSALFDRTLLYTAITRARRRFGYAGRMSALSAAVQRKNYRRTGLG
EALRLVK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=332325 ELB75_RS04960 WP_126982976.1 972093..973796(+) (recD) [Eikenella corrodens strain KCOM 3110]
ATGACCGAATACCGTTACCCCGCCGCCCAAGCCGCTGCCGGAGTGTTGCAGCGTTTGGCACCGCAGGCCGCCGAGCCGGT
GCTGCCGCTGCTGGACGAACTGTTTGCCGCGCAAGAGGGCGGCCACAGCTACATCACGCTTACGCCGCAAGAGGCGGATG
CGTTGCGCCAGGCCGCGCCGGTGGTGGGCGACGGCAGCGCGTTCACGCCTTTGGTGTTGCGCGGGCGGCGGCTGTTTGGC
GGCAGACTGTTTGCACTGGAGCGCAGCGTGGCTGCCGAATTGCGGCGGGTTGCCCGCGGTCGGGTGAGGCTACCTGAAAA
TGCCGGGCTGCGGCAGCGTTTGTGCGATTGGTTTCCCGATGCCGGGCATAACGGGCAGCGGCTGGCTGCCGCGCTGGCGG
TGTTGCAGCCGCTGATGCTGGTCACCGGCGGGCCGGGCACGGGCAAAACCACCACGGTGGCCAAGCTGTTGGCGCTGTTG
TGTGCCGATGCGGCCGAGATGCCGCGCATCGCGCTCACCGCCCCCACCGGCAAGGCTGCCGCCCACATGACCCGTTCGCT
GCACCGCGCGTTGAGTGGCTTTAAATTGGGCAGCGAGCAGGTGTTGCAGCATTTAACGGCATTGGAAGGACAAACTGTCC
ACCGTTTGCTGAAGCTGAACCCAGTAGTCGGCTATTCGAAATTTGACCGCGAGCAGCCGCTGCCATTTGATATTGTGGTG
GCCGATGAGGCTTCCATGCTGGATTTGCCGCTGCTGCACCAATTATTGTGCGCCATTCCCGAGCGTGGCCGCCTGATTTT
GCTGGGTGACGAAAACCAGCTGCCGCCTGTGGGCATCGGCGCCGTGCTGCCAGTGCTGGCGCAGCCCACCGTGCTCACCG
CCGAAGAAGTCGCTAAGTTGGCAGAATGGCTGCCCGAAGGTGTGCCGTTTGAGGTGCGGGATAACCCGCCGCCACTGGCC
GGCAACGTGGCGCGGCTGGAATATAGCCACCGTTTCGACCCGCAGCGTGGTGTGGGCGCATTGGCGCAGGCCGTGGTGAA
CGGGGAGGCCGCCGCTGCCGAAGCTGCGTTTGCCCGCTTCACCGACGACTTGTTCAGGCTACCTGAAACCCCCGCCGCCT
TGGCGCGGCACTTTGCCAAACAGCACGAAGCCTATTGGCAGGCGGTAAGCAGCGGCGATCCGGCAGCCTGCTTCGCCGCC
CAGCAGCAGTTGGTGGTGCTGGGCGCGCGGCGCAGCCAGGCGGCAGAGTTCAACCGCGAATACCGCAAGCTTTTGGCTGC
GCAGGGCAGGGCGTCGGAGCAGGGCTGGTTTGCCGGGCAGGTGCTGATGGTGGCGGAAAACGATTATGCGGTGAAAGTGT
TCAATGGCGACATCGGCATCGTGCTGCCGCACGGCGACGGGCTGGCTGCATTTTTTCCCGATGCCGGCGGCTTCCGCGCC
GTATCGCTCAGCCGATTGCCCGCGCACGATACCGCCTTCGCCATGACCGTACACAAAAGCCAAGGCTCGGAATACCAAGA
AGTGTGGCTCTTGGGCGATGAAGCCGATTCTGCCCTATTCGACCGCACCCTGCTCTACACCGCCATCACCCGCGCCCGCC
GCCGCTTCGGCTACGCTGGCCGGATGAGCGCCCTCTCTGCCGCCGTGCAGCGCAAAAACTACCGCCGTACCGGTTTGGGC
GAGGCTTTGCGATTGGTGAAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_19)

(126-278)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(492-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9SIV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

50.799

99.295

0.504

Multiple sequence alignment