Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FVE21_RS16720 Genome accession   NZ_CP042845
Coordinates   3439624..3440361 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain JME65     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3434624..3445361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE21_RS16705 clpC 3435078..3437651 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FVE21_RS16710 yfiH 3437781..3438512 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  FVE21_RS16715 rluD 3438509..3439489 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FVE21_RS16720 comL 3439624..3440361 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FVE21_RS16725 raiA 3440632..3440973 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FVE21_RS16730 pheL 3441077..3441124 (+) 48 WP_010723158.1 phe operon leader peptide -
  FVE21_RS16735 pheA 3441223..3442383 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  FVE21_RS16740 tyrA 3442426..3443547 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FVE21_RS16745 aroF 3443558..3444628 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FVE21_RS16750 yfiL 3444838..3445203 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=332174 FVE21_RS16720 WP_000197686.1 3439624..3440361(+) (comL) [Escherichia coli strain JME65]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=332174 FVE21_RS16720 WP_000197686.1 3439624..3440361(+) (comL) [Escherichia coli strain JME65]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment