Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FVE23_RS16750 Genome accession   NZ_CP042843
Coordinates   3444737..3445474 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain JME67     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3439737..3450474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FVE23_RS16735 clpC 3440191..3442764 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FVE23_RS16740 yfiH 3442894..3443625 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  FVE23_RS16745 rluD 3443622..3444602 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FVE23_RS16750 comL 3444737..3445474 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FVE23_RS16755 raiA 3445745..3446086 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FVE23_RS16760 pheL 3446190..3446237 (+) 48 WP_010723158.1 phe operon leader peptide -
  FVE23_RS16765 pheA 3446336..3447496 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  FVE23_RS16770 tyrA 3447539..3448660 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FVE23_RS16775 aroF 3448671..3449741 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FVE23_RS16780 yfiL 3449951..3450316 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=332010 FVE23_RS16750 WP_000197686.1 3444737..3445474(+) (comL) [Escherichia coli strain JME67]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=332010 FVE23_RS16750 WP_000197686.1 3444737..3445474(+) (comL) [Escherichia coli strain JME67]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376