Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | EJ992_RS13310 | Genome accession | NZ_CP034569 |
| Coordinates | 2566794..2567129 (+) | Length | 111 a.a. |
| NCBI ID | WP_006637528.1 | Uniprot ID | - |
| Organism | Bacillus licheniformis strain ATCC 14580 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2561794..2572129
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EJ992_RS13290 (EJ992_13290) | gcvT | 2562226..2563320 (-) | 1095 | WP_003183436.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EJ992_RS13295 (EJ992_13295) | - | 2563913..2565592 (+) | 1680 | WP_003183439.1 | DEAD/DEAH box helicase | - |
| EJ992_RS13300 (EJ992_13300) | - | 2565599..2566393 (+) | 795 | WP_003183441.1 | YqhG family protein | - |
| EJ992_RS13305 (EJ992_13305) | sinI | 2566584..2566760 (+) | 177 | WP_003183444.1 | anti-repressor SinI | Regulator |
| EJ992_RS13310 (EJ992_13310) | sinR | 2566794..2567129 (+) | 336 | WP_006637528.1 | transcriptional regulator SinR | Regulator |
| EJ992_RS13315 (EJ992_13315) | tasA | 2567234..2568028 (-) | 795 | WP_003183447.1 | biofilm matrix protein TasA | - |
| EJ992_RS13320 (EJ992_13320) | sipW | 2568102..2568686 (-) | 585 | WP_003183449.1 | signal peptidase I SipW | - |
| EJ992_RS13325 (EJ992_13325) | tapA | 2568683..2569411 (-) | 729 | WP_011198112.1 | amyloid fiber anchoring/assembly protein TapA | - |
| EJ992_RS13330 (EJ992_13330) | - | 2569688..2570008 (+) | 321 | WP_003183454.1 | YqzG/YhdC family protein | - |
| EJ992_RS13335 (EJ992_13335) | - | 2570038..2570220 (-) | 183 | WP_003183456.1 | YqzE family protein | - |
| EJ992_RS13340 (EJ992_13340) | comGG | 2570309..2570674 (-) | 366 | WP_003183459.1 | competence type IV pilus minor pilin ComGG | - |
| EJ992_RS13345 (EJ992_13345) | comGF | 2570687..2571175 (-) | 489 | WP_011201694.1 | competence type IV pilus minor pilin ComGF | - |
| EJ992_RS13350 (EJ992_13350) | comGE | 2571084..2571431 (-) | 348 | WP_009327907.1 | competence type IV pilus minor pilin ComGE | - |
| EJ992_RS13355 (EJ992_13355) | comGD | 2571415..2571852 (-) | 438 | WP_009327905.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12963.59 Da Isoelectric Point: 5.9495
>NTDB_id=331998 EJ992_RS13310 WP_006637528.1 2566794..2567129(+) (sinR) [Bacillus licheniformis strain ATCC 14580]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=331998 EJ992_RS13310 WP_006637528.1 2566794..2567129(+) (sinR) [Bacillus licheniformis strain ATCC 14580]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |