Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EKH72_RS15565 Genome accession   NZ_CP034565
Coordinates   3032466..3033191 (+) Length   241 a.a.
NCBI ID   WP_031414552.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain D3112     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3027466..3038191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKH72_RS15550 - 3028569..3030890 (+) 2322 WP_129830459.1 Tex family protein -
  EKH72_RS15555 - 3031026..3031490 (-) 465 WP_005459035.1 hypothetical protein -
  EKH72_RS15560 bioH 3031614..3032381 (-) 768 WP_165384477.1 pimeloyl-ACP methyl ester esterase BioH -
  EKH72_RS15565 comF 3032466..3033191 (+) 726 WP_031414552.1 amidophosphoribosyltransferase Machinery gene
  EKH72_RS15570 nfuA 3033289..3033873 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  EKH72_RS15575 nudE 3034115..3034684 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  EKH72_RS15580 cysQ 3034726..3035553 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EKH72_RS15585 - 3035839..3036600 (-) 762 WP_005496730.1 type II secretion system protein N -
  EKH72_RS15590 - 3036602..3037093 (-) 492 WP_025505527.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27648.82 Da        Isoelectric Point: 9.1620

>NTDB_id=331948 EKH72_RS15565 WP_031414552.1 3032466..3033191(+) (comF) [Vibrio parahaemolyticus strain D3112]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCGHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=331948 EKH72_RS15565 WP_031414552.1 3032466..3033191(+) (comF) [Vibrio parahaemolyticus strain D3112]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGGTCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCACTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment