Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | EKH72_RS03175 | Genome accession | NZ_CP034565 |
| Coordinates | 600495..601109 (-) | Length | 204 a.a. |
| NCBI ID | WP_129829848.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain D3112 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 595495..606109
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKH72_RS03165 | aceF | 596743..598671 (+) | 1929 | WP_129829847.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
| EKH72_RS03170 | lpdA | 598940..600367 (+) | 1428 | WP_021823119.1 | dihydrolipoyl dehydrogenase | - |
| EKH72_RS03175 | opaR | 600495..601109 (-) | 615 | WP_129829848.1 | transcriptional regulator OpaR | Regulator |
| EKH72_RS03180 | hpt | 601428..601958 (+) | 531 | WP_005462585.1 | hypoxanthine phosphoribosyltransferase | - |
| EKH72_RS03185 | can | 602034..602702 (-) | 669 | WP_005462578.1 | carbonate dehydratase | - |
| EKH72_RS03190 | - | 602986..604656 (+) | 1671 | WP_025792850.1 | SulP family inorganic anion transporter | - |
| EKH72_RS03200 | - | 604908..605825 (+) | 918 | WP_005462584.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23634.89 Da Isoelectric Point: 5.8297
>NTDB_id=331932 EKH72_RS03175 WP_129829848.1 600495..601109(-) (opaR) [Vibrio parahaemolyticus strain D3112]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFQGEAELKELVSAYLDMLCIYNREH
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFQGEAELKELVSAYLDMLCIYNREH
Nucleotide
Download Length: 615 bp
>NTDB_id=331932 EKH72_RS03175 WP_129829848.1 600495..601109(-) (opaR) [Vibrio parahaemolyticus strain D3112]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTCGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAACCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCCAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTCGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAACCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCCAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
99.51 |
100 |
0.995 |
| hapR | Vibrio cholerae C6706 |
72.222 |
97.059 |
0.701 |
| hapR | Vibrio cholerae strain A1552 |
72.222 |
97.059 |
0.701 |