Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EHW89_RS03715 Genome accession   NZ_CP034543
Coordinates   768305..769537 (+) Length   410 a.a.
NCBI ID   WP_106083669.1    Uniprot ID   -
Organism   Streptococcus periodonticum strain KCOM 2412     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 766556..774611 768305..769537 within 0


Gene organization within MGE regions


Location: 766556..774611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHW89_RS03700 (EHW89_03700) - 766556..767395 (+) 840 WP_126466736.1 thymidylate synthase -
  EHW89_RS03705 (EHW89_03705) - 767582..768094 (+) 513 WP_126466738.1 dihydrofolate reductase -
  EHW89_RS09400 (EHW89_03710) - 768094..768267 (+) 174 WP_003035049.1 hypothetical protein -
  EHW89_RS03715 (EHW89_03715) clpX 768305..769537 (+) 1233 WP_106083669.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EHW89_RS03720 (EHW89_03720) yihA 769549..770136 (+) 588 WP_022525923.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EHW89_RS03725 (EHW89_03725) - 770257..770964 (+) 708 WP_126466740.1 glucosaminidase domain-containing protein -
  EHW89_RS03730 (EHW89_03730) - 771137..772882 (+) 1746 WP_126466742.1 ABC transporter ATP-binding protein -
  EHW89_RS03735 (EHW89_03735) - 772863..774611 (+) 1749 WP_126466743.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45670.18 Da        Isoelectric Point: 4.4242

>NTDB_id=331782 EHW89_RS03715 WP_106083669.1 768305..769537(+) (clpX) [Streptococcus periodonticum strain KCOM 2412]
MPTNRTNEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREDEEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDETGSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVDDLVR
ILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKAIERKTGARGLRSIIEETMIDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=331782 EHW89_RS03715 WP_106083669.1 768305..769537(+) (clpX) [Streptococcus periodonticum strain KCOM 2412]
ATGCCTACAAATCGTACGAACGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGCCAAGAAGAAGTTCAAAAAATTAT
CGCAGGAAATAATGCCTTTATTTGTAATGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TGCTGGCAGACTTGTCAGAAGTACCAAAACCGCAAGAACTACTCAATATTTTGAATCATTATGTGATTGGACAAGACCGT
GCTAAGCGAGCATTGGCCGTTGCTGTTTACAATCACTATAAACGCATCAATTTTCATGATAATCGTGAAGATGAGGAAGA
TGTCGAATTGCAGAAATCCAATATCCTCATGATTGGACCAACTGGTTCTGGCAAGACCTTTCTCGCTCAAACTTTGGCAA
AAAGTCTGAATGTTCCTTTTGCGATTGCAGATGCGACAGCTTTGACAGAAGCTGGGTATGTCGGAGAAGATGTTGAAAAT
ATTCTCTTGAAACTCTTGCAAGCAGCAGATTTCAATATTGAGCGTGCTGAACGTGGTATCATCTATGTAGATGAGATTGA
TAAAATTGCGAAGAAAAGCGAAAATGTCTCTATTACTCGTGATGTGTCTGGTGAAGGTGTTCAGCAAGCGCTCCTCAAAA
TTATTGAAGGAACTGTAGCCAGCGTACCTCCGCAAGGCGGCCGCAAGCACCCTCAACAAGAGATGATTCAAGTAGATACG
AAAAATATTCTCTTTATCGTTGGTGGTGCATTTGACGGTATTGAAGAAATTGTCAAACAACGTCTAGGCGAAAAAATTAT
CGGTTTTGGTCAAAACAACAAGGCCATTGATGAAACTGGTTCTTATATGCAAGAAATCATCTCTGAAGATATTCAAAAAT
TTGGCTTGATTCCTGAATTGATTGGTCGTTTGCCTGTGTTTGCAGCGCTTGAGCCTTTAACAGTTGATGATTTGGTGCGA
ATCCTTCGCGAACCAAAGAATGCTTTAGTGAAGCAATATCAGACTCTTCTTTCTTATGATGATGTCAAATTGGAGTTTGA
TGATGATGCTCTCCAAGAGATTGCCAACAAAGCCATTGAACGTAAGACAGGTGCGCGTGGATTACGTTCAATCATCGAGG
AAACTATGATAGATGTCATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAGCTGGTACGGATTACCAAGGAAGCAGTTGAC
GGAACGGATAAGCCGATTTTAGAAACAGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.458

98.049

0.573

Multiple sequence alignment