Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FQR64_RS18985 Genome accession   NZ_CP042585
Coordinates   3822792..3823232 (+) Length   146 a.a.
NCBI ID   WP_000360927.1    Uniprot ID   -
Organism   Escherichia coli strain LD91-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3817792..3828232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQR64_RS18965 (FQR64_18970) aroP 3818790..3820163 (+) 1374 WP_000969915.1 aromatic amino acid transporter AroP -
  FQR64_RS18970 (FQR64_18975) ampE 3820206..3821060 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  FQR64_RS18975 (FQR64_18980) ampD 3821057..3821608 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FQR64_RS18980 (FQR64_18985) nadC 3821696..3822589 (+) 894 WP_001135168.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FQR64_RS18985 (FQR64_18990) pilA 3822792..3823232 (+) 441 WP_000360927.1 prepilin peptidase-dependent pilin Machinery gene
  FQR64_RS18990 (FQR64_18995) pilB 3823242..3824627 (+) 1386 WP_001025170.1 type II secretion system protein GspE Machinery gene
  FQR64_RS18995 (FQR64_19000) hofC 3824617..3825819 (+) 1203 WP_000157236.1 protein transport protein HofC -
  FQR64_RS19000 (FQR64_19005) guaC 3825854..3826897 (-) 1044 WP_001217338.1 GMP reductase -
  FQR64_RS25680 - 3827053..3827097 (-) 45 WP_120795372.1 protein YacM -
  FQR64_RS19005 (FQR64_19010) coaE 3827122..3827742 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15533.60 Da        Isoelectric Point: 4.2529

>NTDB_id=331780 FQR64_RS18985 WP_000360927.1 3822792..3823232(+) (pilA) [Escherichia coli strain LD91-1]
MDKQSGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTH
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=331780 FQR64_RS18985 WP_000360927.1 3822792..3823232(+) (pilA) [Escherichia coli strain LD91-1]
ATGGACAAGCAAAGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCAC
TATGTTTCAGCCATGAGTGTGGCAAAAGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

42.742

84.932

0.363

Multiple sequence alignment