Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   SPJ_RS09615 Genome accession   NC_012466
Coordinates   1809387..1810007 (-) Length   206 a.a.
NCBI ID   WP_000839915.1    Uniprot ID   A0A0U0LTQ6
Organism   Streptococcus pneumoniae JJA     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804387..1815007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS09590 (SPJ_1934) recA 1804764..1805930 (-) 1167 WP_001085463.1 recombinase RecA Machinery gene
  SPJ_RS09595 (SPJ_1935) cinA 1805985..1807241 (-) 1257 WP_000642709.1 competence/damage-inducible protein A Machinery gene
  SPJ_RS09600 (SPJ_1936) - 1807326..1808342 (-) 1017 WP_000239282.1 LCP family protein -
  SPJ_RS09605 (SPJ_1937) - 1808350..1808868 (-) 519 WP_000455537.1 GNAT family N-acetyltransferase -
  SPJ_RS09610 (SPJ_1938) tsaE 1808858..1809301 (-) 444 WP_000288233.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SPJ_RS09615 (SPJ_1939) comM 1809387..1810007 (-) 621 WP_000839915.1 hypothetical protein Regulator
  SPJ_RS09620 (SPJ_1940) - 1810390..1811253 (-) 864 WP_001093639.1 helix-turn-helix transcriptional regulator -
  SPJ_RS13610 (SPJ_1941) - 1811445..1811615 (+) 171 WP_001227862.1 PhrA family quorum-sensing system peptide -
  SPJ_RS09630 (SPJ_1942) pneA1 1811718..1811942 (+) 225 WP_000181087.1 two-peptide bacteriocin subunit PneA1 -
  SPJ_RS09635 (SPJ_1943) pneA2 1811949..1812137 (+) 189 WP_000786759.1 two-peptide bacteriocin subunit PneA2 -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23580.77 Da        Isoelectric Point: 10.1254

>NTDB_id=33176 SPJ_RS09615 WP_000839915.1 1809387..1810007(-) (comM) [Streptococcus pneumoniae JJA]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTVFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPMTI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=33176 SPJ_RS09615 WP_000839915.1 1809387..1810007(-) (comM) [Streptococcus pneumoniae JJA]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCCTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGTTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCTGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATGACCATT
GTCTCACTTCTGATTTATATTGGACTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U0LTQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

99.515

100

0.995
  comM Streptococcus pneumoniae R6

99.515

100

0.995
  comM Streptococcus pneumoniae TIGR4

99.515

100

0.995
  comM Streptococcus mitis NCTC 12261

38.974

94.66

0.369
  comM Streptococcus mitis SK321

38.974

94.66

0.369

Multiple sequence alignment