Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EJ378_RS11430 Genome accession   NZ_CP034541
Coordinates   2390457..2392187 (-) Length   576 a.a.
NCBI ID   WP_126427505.1    Uniprot ID   -
Organism   Brevibacillus marinus strain SCSIO 07484     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2385457..2397187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJ378_RS11405 steA 2385874..2387037 (-) 1164 WP_420897758.1 putative cytokinetic ring protein SteA -
  EJ378_RS11410 - 2387143..2387319 (-) 177 WP_126427497.1 DUF2759 family protein -
  EJ378_RS11415 - 2387469..2388035 (-) 567 WP_126427499.1 beta-class carbonic anhydrase -
  EJ378_RS11420 spo0A 2388063..2388845 (-) 783 WP_126427501.1 sporulation transcription factor Spo0A -
  EJ378_RS11425 spoIVB 2389032..2390348 (-) 1317 WP_126427503.1 SpoIVB peptidase -
  EJ378_RS11430 recN 2390457..2392187 (-) 1731 WP_126427505.1 DNA repair protein RecN Machinery gene
  EJ378_RS11435 ahrC 2392201..2392650 (-) 450 WP_126427507.1 transcriptional regulator AhrC/ArgR -
  EJ378_RS11440 - 2392657..2393514 (-) 858 WP_126427509.1 NAD(+)/NADH kinase -
  EJ378_RS11445 - 2393866..2394681 (-) 816 WP_126427511.1 TlyA family RNA methyltransferase -
  EJ378_RS11450 dxs 2394685..2396574 (-) 1890 WP_126427513.1 1-deoxy-D-xylulose-5-phosphate synthase -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64773.93 Da        Isoelectric Point: 4.9302

>NTDB_id=331729 EJ378_RS11430 WP_126427505.1 2390457..2392187(-) (recN) [Brevibacillus marinus strain SCSIO 07484]
MLHELTIRNFAIIKSVTISFRRGLNILTGETGAGKSIIIDAIGLLLGERGSADFVRHGEKRAEVEGLFELPADSPAFAIC
EGFGVQVEADGMLVVRRDISQQGKSVIRINGQLVTLAMLRELGPWLVQIHGQHDAITLMQSEKHIEWLDAYGEAELADTK
QEYARLYNAYRKMRQDLERMARNERELAQRIDLLQYQLKEIEEAALEPGEDEKLLAQRKKWSNVEKVFAGIEHAYQALSG
EQRGLDWLAHAMSELERVLPYDDSLAPVVEAIRSAYYQIEDAVHSLAQLKEQLEYSPAELAAVEERLDLIYRLRRKYGKS
VNDILEYAAAIQDELEEMQHYDERLQKLEAHLAELAADLAVEALELSSKRRELAARLAKAIEEQLHELCMERARFAIEVR
QLEDEQGIEVAGVKRQINANGIDQVEFMIAPNPGEPLRPLAKIASGGELSRVMLAIKTILAASDQVETFIFDEIDTGVSG
RAAQAIAEKLARVARHRQVLCISHLPQVASMADVHFLIHKEIGEEQTVTHVTPLSDEERVIELARMLGGAEVTEKTKEHA
REMIQLGKQRKAVNAD

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=331729 EJ378_RS11430 WP_126427505.1 2390457..2392187(-) (recN) [Brevibacillus marinus strain SCSIO 07484]
ATGCTGCACGAACTGACGATCCGCAATTTTGCCATCATCAAATCAGTGACGATTTCCTTTCGGCGCGGCTTGAACATCCT
GACGGGGGAAACGGGCGCGGGCAAGTCGATCATCATCGACGCGATCGGCCTTTTGCTCGGGGAGCGCGGTTCCGCCGACT
TTGTCCGGCACGGCGAGAAGCGGGCGGAAGTGGAAGGGTTGTTCGAGCTGCCGGCGGATTCGCCCGCTTTCGCCATTTGC
GAAGGGTTCGGCGTGCAGGTGGAAGCGGACGGCATGCTGGTGGTGAGGCGGGACATCTCGCAGCAGGGGAAAAGCGTGAT
TCGCATCAATGGCCAGCTGGTGACATTGGCGATGCTGCGGGAACTGGGGCCGTGGCTGGTGCAGATTCACGGTCAGCACG
ACGCGATCACGCTGATGCAGAGCGAGAAGCACATCGAGTGGCTGGACGCCTACGGCGAAGCGGAGCTGGCGGACACCAAA
CAGGAGTACGCGCGGCTCTATAACGCCTACCGCAAGATGAGGCAGGATTTGGAGCGGATGGCCCGCAACGAGCGGGAGCT
GGCGCAGCGCATCGATCTGCTGCAATACCAGCTGAAGGAAATTGAGGAGGCGGCGCTGGAACCCGGCGAAGATGAAAAAC
TGCTCGCGCAGCGCAAAAAGTGGAGCAACGTGGAGAAAGTGTTTGCCGGCATCGAGCACGCCTATCAGGCTCTCTCCGGC
GAGCAGCGCGGGCTGGATTGGCTGGCTCACGCGATGAGCGAGCTGGAGCGCGTCTTGCCCTATGACGACAGCCTGGCGCC
GGTGGTGGAAGCGATCCGCTCCGCCTACTACCAGATTGAGGATGCGGTACACAGCCTGGCCCAGCTGAAGGAACAGCTGG
AGTATTCCCCCGCGGAGCTGGCCGCGGTGGAGGAGCGGCTTGATCTGATCTACCGCTTGCGCCGCAAGTACGGCAAAAGC
GTCAACGACATTCTCGAATACGCGGCGGCGATCCAAGATGAACTGGAGGAGATGCAGCACTACGACGAGCGCCTGCAAAA
GCTGGAGGCTCATCTGGCGGAATTGGCCGCCGATCTGGCCGTGGAGGCGCTGGAATTGAGCAGCAAGCGCCGCGAACTGG
CCGCCCGGCTGGCAAAAGCGATCGAGGAACAGCTGCACGAATTGTGTATGGAGCGGGCGCGGTTCGCGATTGAGGTGAGA
CAGCTGGAGGATGAACAGGGCATCGAAGTGGCGGGGGTGAAACGGCAGATCAACGCCAACGGCATCGACCAGGTCGAGTT
TATGATCGCCCCCAATCCCGGCGAACCGCTGCGGCCGCTGGCCAAGATTGCATCGGGCGGCGAACTCTCCCGCGTGATGC
TGGCGATTAAAACGATCCTCGCGGCGAGCGATCAGGTGGAGACGTTCATCTTCGACGAAATTGATACCGGCGTCAGCGGG
CGGGCCGCACAAGCGATCGCCGAGAAACTGGCGCGCGTCGCGCGGCACCGGCAGGTTCTCTGCATCTCCCATTTACCGCA
GGTGGCCTCCATGGCGGACGTGCACTTCCTGATTCACAAAGAAATCGGCGAAGAGCAGACGGTCACCCACGTTACGCCGC
TCAGCGACGAGGAACGGGTGATCGAGCTGGCGCGCATGCTGGGGGGCGCGGAAGTGACGGAAAAAACCAAAGAACACGCG
CGGGAAATGATCCAGTTGGGAAAACAACGTAAGGCTGTCAATGCTGATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.09

100

0.481

Multiple sequence alignment