Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FGL73_RS10805 Genome accession   NZ_CP042408
Coordinates   2218186..2218782 (+) Length   198 a.a.
NCBI ID   WP_038599083.1    Uniprot ID   -
Organism   Lactococcus lactis strain CBA3619     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2213186..2223782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL73_RS10790 (FGL73_10790) ahpC 2213558..2214121 (+) 564 WP_003131651.1 alkyl hydroperoxide reductase subunit C -
  FGL73_RS10795 (FGL73_10795) ahpF 2214187..2215716 (+) 1530 WP_058204979.1 alkyl hydroperoxide reductase subunit F -
  FGL73_RS10800 (FGL73_10800) - 2215882..2218047 (+) 2166 WP_098393160.1 penicillin-binding transpeptidase domain-containing protein -
  FGL73_RS10805 (FGL73_10805) recR 2218186..2218782 (+) 597 WP_038599083.1 recombination mediator RecR Machinery gene
  FGL73_RS10810 (FGL73_10810) - 2218899..2219948 (+) 1050 WP_146978386.1 D-alanine--D-alanine ligase -
  FGL73_RS10815 (FGL73_10815) murF 2220023..2221345 (+) 1323 WP_146978387.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  FGL73_RS10820 (FGL73_10820) - 2221515..2223167 (+) 1653 WP_146978388.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21939.24 Da        Isoelectric Point: 4.8226

>NTDB_id=331629 FGL73_RS10805 WP_038599083.1 2218186..2218782(+) (recR) [Lactococcus lactis strain CBA3619]
MYYPEPIARLIESFSKLPGIGQKTATRLAFYTIGMEDQDVNEFAKNLLSAKRDLSFCSICGNLTESDPCTICTDPTRDRT
TILVVEESKDVLAMEKIREYRGLYHVLHGTISPMNGISPDEINVKTLITRLMDSEVKEVIIATNATSDGEATAMYLARMI
KPAGIKVTRLARGLAVGSDIEYADEITLSKAVENRLEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=331629 FGL73_RS10805 WP_038599083.1 2218186..2218782(+) (recR) [Lactococcus lactis strain CBA3619]
ATGTATTATCCTGAACCTATTGCTCGCCTGATTGAGTCGTTCTCAAAATTACCAGGGATTGGTCAAAAAACAGCGACTCG
ATTGGCTTTTTATACGATTGGCATGGAAGATCAAGATGTCAATGAATTTGCAAAAAATCTTCTGTCAGCAAAACGGGATT
TGAGTTTTTGCTCGATTTGCGGGAATTTAACAGAAAGTGATCCTTGTACCATTTGTACCGATCCAACGCGTGATCGAACA
ACTATATTGGTCGTTGAAGAATCTAAAGATGTTCTTGCTATGGAAAAAATCCGGGAATATCGAGGACTTTATCATGTTTT
GCATGGTACGATTAGTCCAATGAATGGAATTTCTCCTGATGAAATTAATGTTAAAACATTGATTACAAGATTAATGGATT
CAGAGGTTAAAGAAGTGATTATCGCAACTAATGCCACTTCTGACGGAGAAGCAACCGCCATGTATCTGGCTCGAATGATT
AAGCCTGCAGGAATTAAAGTCACTCGCTTGGCTCGTGGATTAGCTGTAGGGTCTGATATAGAATACGCAGATGAAATTAC
TTTATCAAAAGCAGTAGAGAATCGGTTGGAAATTTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

78.283

100

0.783
  recR Bacillus subtilis subsp. subtilis str. 168

59.596

100

0.596
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485