Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FGL73_RS03090 Genome accession   NZ_CP042408
Coordinates   655513..656748 (+) Length   411 a.a.
NCBI ID   WP_012897750.1    Uniprot ID   -
Organism   Lactococcus lactis strain CBA3619     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 650513..661748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL73_RS03060 (FGL73_03060) - 651347..651940 (+) 594 WP_038601098.1 xanthine phosphoribosyltransferase -
  FGL73_RS03065 (FGL73_03065) - 651989..653293 (+) 1305 WP_003132095.1 nucleobase:cation symporter-2 family protein -
  FGL73_RS03070 (FGL73_03070) - 653322..653735 (-) 414 WP_146978013.1 hypothetical protein -
  FGL73_RS03075 (FGL73_03075) - 653855..654364 (-) 510 WP_146978014.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  FGL73_RS03080 (FGL73_03080) - 654763..655269 (+) 507 WP_038601089.1 dihydrofolate reductase -
  FGL73_RS03090 (FGL73_03090) clpX 655513..656748 (+) 1236 WP_012897750.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FGL73_RS03095 (FGL73_03095) yihA 656745..657332 (+) 588 WP_010905788.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FGL73_RS03100 (FGL73_03100) folB 657386..657736 (+) 351 WP_098393867.1 dihydroneopterin aldolase -
  FGL73_RS03105 (FGL73_03105) folE 657816..658865 (+) 1050 WP_098393866.1 GTP cyclohydrolase I FolE -
  FGL73_RS03110 (FGL73_03110) folP 658862..659935 (+) 1074 WP_146978015.1 dihydropteroate synthase -
  FGL73_RS03115 (FGL73_03115) - 659938..660435 (+) 498 WP_038601076.1 NUDIX domain-containing protein -
  FGL73_RS03120 (FGL73_03120) - 660454..661737 (+) 1284 WP_146978016.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46024.89 Da        Isoelectric Point: 4.6053

>NTDB_id=331564 FGL73_RS03090 WP_012897750.1 655513..656748(+) (clpX) [Lactococcus lactis strain CBA3619]
MSNTQNPNIHCSFCGKSQDDVKKMIAGSDVYICNECIELSTRILEEELREEQDSEMLEVKTPKEMFDHLNEYVIGQEKAK
RALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENILL
KLLQASDFNIERAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKNI
LFIVGGAFDGIEEIVKQRLGEKIIGFGANNKKLNDDDSYMQEIIAEDIQKFGLIPEFIGRLPIVAALERLTEEDLIQILT
EPKNALIKQYKQLLLFDNVELEFEDEALMAIARKAIERKTGARGLRSIIEEVMMDIMFEVPSHEEITKVIINEAVVDGKA
EPQMIREAKKK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=331564 FGL73_RS03090 WP_012897750.1 655513..656748(+) (clpX) [Lactococcus lactis strain CBA3619]
ATGTCAAATACACAAAATCCAAATATACATTGTTCTTTCTGCGGAAAGAGTCAAGATGATGTAAAAAAAATGATTGCCGG
TTCAGACGTTTATATTTGTAATGAATGTATTGAACTTTCAACTCGAATCTTAGAAGAAGAATTAAGAGAAGAACAAGATT
CAGAAATGCTTGAAGTTAAAACACCTAAAGAAATGTTTGACCATTTAAATGAATATGTGATAGGTCAAGAAAAAGCAAAA
CGTGCACTTGCAGTTGCTGTTTATAATCATTACAAACGAATTAATTTTACAGCAAGTAAAATTGCTGAAGATATTGAACT
ACAAAAATCAAATATTCTATTAATCGGACCTACCGGTTCTGGTAAGACTTTTCTCGCTCAAACTTTAGCGAAATCACTCA
ATGTTCCGTTTGCGATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTTGGAGAAGACGTTGAAAATATTCTTTTA
AAACTTTTACAAGCGAGTGATTTCAATATTGAACGTGCCGAACGTGGAATTATCTATATCGATGAAATTGATAAAATTGC
TAAAAAATCTGAAAATGTATCAATTACTCGTGACGTTTCCGGGGAAGGTGTTCAACAAGCCCTTTTGAAAATTATTGAGG
GGACAGTAGCTAGTGTTCCACCACAAGGTGGACGTAAACATCCTAATCAAGAAATGATTCAAATTGATACCAAAAATATC
TTATTTATTGTTGGTGGAGCTTTTGACGGGATTGAAGAAATTGTCAAACAACGTTTAGGTGAAAAAATTATTGGTTTTGG
TGCCAATAATAAAAAATTAAATGACGATGATTCTTATATGCAAGAAATTATTGCCGAGGACATTCAAAAATTCGGATTAA
TTCCTGAATTTATTGGTCGTCTGCCAATTGTTGCTGCTTTGGAACGTTTGACCGAAGAAGATTTGATTCAAATTTTGACA
GAACCTAAAAATGCTTTGATTAAACAATATAAACAACTCCTTTTATTTGATAATGTTGAACTTGAATTTGAAGATGAAGC
CCTCATGGCAATTGCTAGAAAAGCAATTGAGCGCAAAACAGGAGCGCGTGGACTTCGTTCAATTATTGAAGAAGTAATGA
TGGATATCATGTTTGAAGTTCCAAGTCATGAAGAAATAACAAAAGTTATTATTAATGAAGCAGTTGTTGATGGAAAAGCT
GAGCCACAAATGATTCGAGAGGCCAAGAAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(108-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(10-46)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(310-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

76.808

97.567

0.749
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.883

95.864

0.564